Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7 140 3e-28 seq12 127 2e-24 seq16 118 9e-22 seq17 114 1e-20 >seq7 Length=519835 Score = 140 bits (154), Expect = 3e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGC 25080 |||| || ||| | ||||| | |||||||| || || ||||| ||||| | ||| Sbjct 260563 TGACGGGCAAAACGATCACCTTGGAAGTGGAATCCTCGGACACCATCGACAACGTCAAGG 260504 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 |||||| ||||| ||||| || || |||||||| |||||| | || || ||||| | Sbjct 260503 CGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCGGTTGATCTTCGCCGGGA 260444 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 |||| |||||||| | |||||| ||| ||||| || ||||||||||| |||||| ||| Sbjct 260443 AACAGTTAGAAGACGGACGCACTTTGGCGGATTATAACATTCAAAAAGAGTCCACGTTAC 260384 Query 25201 ATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||| || | || ||||| || Sbjct 260383 ACTTGGTGTTACGCCTGAGAGGCGG 260359 >seq12 Length=1122692 Score = 127 bits (140), Expect = 2e-24 Identities = 150/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 ||||| |||||||| || ||| ||||||| ||||||| ||||| || ||||| ||||| Sbjct 917155 GTAAA-ACTTTGACTGGGAAAACCATCACGCTCGAAGTCGAGTCCTCGGACACGATCGAC 917097 Query 25071 TCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129 |||| || |||| ||| ||||| || || ||||| || ||||| ||||| | || Sbjct 917096 AACGTGAAAGCGAAAATTCAA-GACAAGGAGGGCATTCCGCCGGACCAGCAGCGATTGAT 917038 Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189 ||| ||||| ||||| |||||||| | | ||| | | |||||||| || |||||||| Sbjct 917037 TTTCGCCGGTAAACAGTTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGA 916978 Query 25190 ATCCACGCTACATTTAGTG 25208 ||| || | || || ||| Sbjct 916977 ATCAACCTTGCACTTGGTG 916959 >seq16 Length=955652 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| ||||||| | ||||| ||||| || Sbjct 707512 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCC 707453 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || || || || || Sbjct 707452 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707393 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| || || |||||||| | | || ||| ||||||||| Sbjct 707392 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAAC 707333 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || || || || ||| | || || ||| Sbjct 707332 ATCCAGAAGGAGTCTACGTTGCACTTGGTG 707303 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| ||||||| | ||||| ||||| || Sbjct 707740 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCC 707681 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || || || || || Sbjct 707680 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707621 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| || || |||||||| | | || ||| ||||||||| Sbjct 707620 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAAC 707561 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || || || || ||| | || || ||| Sbjct 707560 ATCCAGAAGGAGTCTACGTTGCACTTGGTG 707531 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| ||||||| | ||||| ||||| || Sbjct 707968 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTTGAGTCTTCC 707909 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || || || || || Sbjct 707908 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707849 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| || || |||||||| | | || ||| ||||||||| Sbjct 707848 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAAC 707789 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || || || || ||| | || || ||| Sbjct 707788 ATCCAGAAGGAGTCTACGTTGCACTTGGTG 707759 Score = 86.0 bits (94), Expect = 5e-12 Identities = 187/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 51015 CATATACCTGATTCTGCCAAAAATTTTGCGTTCTTTGAACGGCCTG-TCGTGCACACCGC 51073 ||| |||| ||| | || || || | || ||||| || | || |||||||| ||| Sbjct 16542 CATGTACCGAATTTTCCCGAATATCTCTCGCTCTTTCCACC-CTTGATCGTGCACGCCGA 16600 Query 51074 AAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGAT 51133 || |||||||| || || || ||| | | ||||| | ||||| | || ||| Sbjct 16601 CGATGGACCACATGCATCCGACGTAACCGCTCGGATCTCTTCCATCGAGCGACCAACGAT 16660 Query 51134 CGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATTT 51193 |||| | | ||||| || ||| || | || | | || | |||||||| |||| Sbjct 16661 CGTTCAAAGCGATGGCGTATTTCAAAGCGTTTTCGGGAGTATCGGACCATTCCAGTATTT 16720 Query 51194 TCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGCA-ACGAAGCT-GCGC 51251 |||| ||||| ||||||||||| | || ||||| ||||| || | ||| |||| ||| Sbjct 16721 TCTTTGCCCAATACATGCGCATAAATCCATGCATTTTGCCACCGTACACG-AGCTCGCG- 16778 Query 51252 TTGAGCCGAGTTCCACAATTCGTCGTGAGTTT 51283 ||| || | ||||| || | |||||| |||| Sbjct 16779 TTGCGCAGCATTCCATAAATTGTCGTGCGTTT 16810 >seq17 Length=937610 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 25035 ATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGAC 25094 ||||| ||||||| ||||| || ||||||||||| | ||| |||||| ||| Sbjct 351515 ATCACCCTCGAAGTCGAGTCTTCGGACACTATCGACAACGTCAAGGCGAAAATCCAAGAC 351456 Query 25095 AAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGAT 25154 ||||| || || || || || || ||||| | || || ||||| ||||||||||||||| Sbjct 351455 AAAGAGGGCATCCCGCCGGATCAGCAGCGATTGATCTTCGCCGGAAAACAATTAGAAGAT 351396 Query 25155 GATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCAC 25195 | || ||| | | ||| || || ||||||||||||||||| Sbjct 351395 GGCCGAACTTTAGCCGACTATAACATTCAAAAAGAATCCAC 351355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327889095115