Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12 132 4e-26 seq17 118 9e-22 seq7 111 1e-19 seq16 109 5e-19 seq14 84.2 2e-11 >seq12 Length=1122692 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 22233 TAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGA 22292 ||||||||| || || ||||| |||| || ||||| || || | || || | ||| | Sbjct 917154 TAAAACTTTGACTGGGAAAACCATCACGCTCGAAGTCGAGTCCTCGGACACGATCGACAA 917095 Query 22293 TATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATT 22352 | ||| |||||||||||||||||||| ||||| || || || || || | || || Sbjct 917094 CGTGAAAGCGAAAATTCAAGACAAGGAGGGCATTCCGCCGGACCAGCAGCGATTGATTTT 917035 Query 22353 TGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATC 22412 ||||| ||||||||||| || | || || | ||||||||||| ||||||||||| Sbjct 917034 CGCCGGTAAACAGTTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAATC 916975 Query 22413 CACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| | || || || ||||| ||||| || || Sbjct 916974 AACCTTGCACTTGGTGTTGCGTTTGCGAGGCGG 916942 >seq17 Length=937610 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || ||| |||| || ||||| || | | || || | ||| | |||| Sbjct 351527 ACGGGCAAGACGATCACCCTCGAAGTCGAGTCTTCGGACACTATCGACAACGTCAAGGCG 351468 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| |||||||| ||||| || || || ||||| || || | || || ||||| ||| Sbjct 351467 AAAATCCAAGACAAAGAGGGCATCCCGCCGGATCAGCAGCGATTGATCTTCGCCGGAAAA 351408 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || ||||| ||| ||| || | |||| || ||||||||||||||||||||| | || Sbjct 351407 CAATTAGAAGATGGCCGAACTTTAGCCGACTATAACATTCAAAAAGAATCCACCTTGCAC 351348 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| |||||||| || Sbjct 351347 TTGGTCTTGCGTTTGCGCGGCGG 351325 >seq7 Length=519835 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || |||||| |||| | ||||||||| || | || ||| | ||| | |||| Sbjct 260561 ACGGGCAAAACGATCACCTTGGAAGTGGAATCCTCGGACACCATCGACAACGTCAAGGCG 260502 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| ||||||||||| || || || || || || || || | || || ||||| ||| Sbjct 260501 AAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCGGTTGATCTTCGCCGGGAAA 260442 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 |||||||| || ||||| | | ||||| |||||||||||||| ||||| |||| Sbjct 260441 CAGTTAGAAGACGGACGCACTTTGGCGGATTATAACATTCAAAAAGAGTCCACGTTACAC 260382 Query 22423 TTAGTTTTGCG 22433 || || || || Sbjct 260381 TTGGTGTTACG 260371 >seq16 Length=955652 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || ||||| || || ||||| |||| | ||||| || | | Sbjct 707513 GATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTC 707454 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | ||| | |||| || || ||||||||||| ||||| || || ||||| Sbjct 707453 CGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCA 707394 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || | || || ||||| || |||||||| || | | || | |||||||||| Sbjct 707393 GCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAA 707334 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || || || | || || || ||||| || || || || Sbjct 707333 CATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTACGAGGCGG 707286 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || ||||| || || ||||| |||| | ||||| || | | Sbjct 707741 GATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTC 707682 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | ||| | |||| || || ||||||||||| ||||| || || ||||| Sbjct 707681 CGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCA 707622 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || | || || ||||| || |||||||| || | | || | |||||||||| Sbjct 707621 GCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAA 707562 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || || || | || || || ||||| ||| | || || Sbjct 707561 CATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTGAGAGGCGG 707514 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || ||||| || || ||||| |||| | ||||| || | | Sbjct 707969 GATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTTGAGTCTTC 707910 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | ||| | |||| || || ||||||||||| ||||| || || ||||| Sbjct 707909 CGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCA 707850 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || | || || ||||| || |||||||| || | | || | |||||||||| Sbjct 707849 GCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAA 707790 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || || || | || || || ||||| ||| | || || Sbjct 707789 CATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTGAGAGGCGG 707742 >seq14 Length=1037991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 117064 TGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTT-TGCTGCCATATTT 117122 || |||| |||||| ||||||||||| ||||| || ||| ||| |||| | || | Sbjct 66331 TGGTCGCGTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCTCTTTCTGCT-CAATCTAC 66273 Query 117123 TTTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGT 117182 | |||||| | ||| | |||||||| || || || |||||| || || || | Sbjct 66272 TGGCTCAAGAAGAGAGGCATGATGCCGGGGCTCACCTTCTCCAACGAGTTGATCTCCAGA 66213 Query 117183 GACGAAGGTTTACACACCGATTTTGCGTGCATG 117215 ||||||||||| |||| |||||||||||| || Sbjct 66212 GACGAAGGTTTGCACAGAGATTTTGCGTGCTTG 66180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727892575865