Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq16 190 4e-43 seq7 188 1e-42 seq12 159 6e-34 seq17 147 4e-30 seq13 102 2e-16 seq11 86.0 1e-11 >seq16 Length=955652 Score = 190 bits (210), Expect = 4e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | ||| ||||| || |||||||| ||||||| | || || || Sbjct 707298 CGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCG 707357 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 |||||||||||||| |||||||| || | || || || || || || || ||||||||| Sbjct 707358 TCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTG 707417 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| ||||| ||||||||| ||||||||||| | || || |||||||| |||||| Sbjct 707418 TCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACTTCCAACGTGATG 707477 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | ||||||||||| || ||||| Sbjct 707478 GTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707512 Score = 190 bits (210), Expect = 4e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | ||| ||||| || |||||||| ||||||| | || || || Sbjct 707526 CGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCG 707585 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 |||||||||||||| |||||||| || | || || || || || || || ||||||||| Sbjct 707586 TCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTG 707645 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| ||||| ||||||||| ||||||||||| | || || |||||||| |||||| Sbjct 707646 TCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACTTCCAACGTGATG 707705 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | ||||||||||| || ||||| Sbjct 707706 GTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707740 Score = 190 bits (210), Expect = 4e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | ||| ||||| || |||||||| ||||||| | || || || Sbjct 707754 CGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCG 707813 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 |||||||||||||| |||||||| || | || || || || || || || ||||||||| Sbjct 707814 TCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTG 707873 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| ||||| ||||||||| ||||||||||| | || || |||||||| |||||| Sbjct 707874 TCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAACGTGATG 707933 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | ||||||||||| || ||||| Sbjct 707934 GTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707968 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | ||| ||||| || |||||||| ||||||| | || || || Sbjct 707982 CGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCG 708041 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 |||||||||||||| |||||||| || | || || || || || ||||| ||| Sbjct 708042 TCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGAATTCCT 708095 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| || ||||| ||||| || || ||| |||||||| || | || || |||||| Sbjct 708681 CCTTCTTTATCTTGGATCTTCGCTTTCACGTTATCGATGGTATCCGAAGACTCCACTTCC 708740 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| ||||| | ||| || ||||| || ||||| Sbjct 708741 AAGGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAAATTTGCAT 708784 >seq7 Length=519835 Score = 188 bits (208), Expect = 1e-42 Identities = 158/194 (81%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| || |||||||||| ||||||||||||||| ||||||||||| | | || | Sbjct 260368 AGGCGTAACACCAAGTGTAACGTGGACTCTTTTTGAATGTTATAATCCGCCAAAGTGCGT 260427 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||||||||| ||||||||||| || | | || ||||| || || ||||||||| Sbjct 260428 CCGTCTTCTAACTGTTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGAGGGATGCCTTCC 260487 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| || || ||||||||| ||||||||||| | ||||| |||||||||||| Sbjct 260488 TTGTCTTGGATTTTCGCCTTGACGTTGTCGATGGTGTCCGAGGATTCCACTTCCAAGGTG 260547 Query 68424 ATGGTTTTTCCCGT 68437 || ||||| ||||| Sbjct 260548 ATCGTTTTGCCCGT 260561 >seq12 Length=1122692 Score = 159 bits (176), Expect = 6e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | || || |||||||||||||| ||||| | ||| || ||||| Sbjct 916954 CGCAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCGCGAGAGTTCTCCCG 917013 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||||||||| || |||||||| || | || || ||||| || |||||||| |||||| Sbjct 917014 TCTTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCGGAATGCCCTCCTTG 917073 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| || || || ||| ||||| ||||| | || || ||||| | |||||| Sbjct 917074 TCTTGAATTTTCGCTTTCACGTTGTCGATCGTGTCCGAGGACTCGACTTCGAGCGTGATG 917133 Query 68427 GTTTTTCCCGT 68437 ||||| || || Sbjct 917134 GTTTTCCCAGT 917144 Score = 84.2 bits (92), Expect = 4e-11 Identities = 192/286 (67%), Gaps = 16/286 (6%) Strand=Plus/Plus Query 176259 GACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAA 176318 ||||| |||||| || || || | || | ||| || || |||| || | | ||| Sbjct 1064149 GACGCGTGGTCCTTCCCGCCTTGCAAACGCGTACCAAACTGACCGCTCGGGACTAACAAG 1064208 Query 176319 TTGATGTTATTCGAACCCACGTAGTCTTGGGCCA---TTCCGACTATGG-CGCCCTGGAG 176374 |||||||| |||| || ||| | ||||| || | | ||| | | | ||| || Sbjct 1064209 TTGATGTTGTTCGTCCCAACGAAATCTTGAGCGAGATTAACGATTGTCGACGCA----AG 1064264 Query 176375 AGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGAC 176434 |||||| ||||||||||||||| ||| || || ||| ||| || |||||||| Sbjct 1064265 AGACGCTTCGCCGTGGTGATAGGCGGAGTGTTCCGAGACGTAACCGCTCAATTGCGCGAC 1064324 Query 176435 TTTGATTT----CTTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCG 176490 |||||| | ||| || || | ||| || ||| |||| || || || |||| Sbjct 1064325 TTTGATGTCCGACTTCAAC----TTTCTCTTGAAGCACGAAAACATAACTTTTCGTTGCG 1064380 Query 176491 AGGGCTTCAGACCATCGACGACCGACGGAATGGAACGCTCTACATC 176536 | ||||| | |||||| | | | || ||||| |||||| || ||| Sbjct 1064381 AAGGCTTGAAACCATCAATGGCGGATGGAATAGAACGCATTAAATC 1064426 >seq17 Length=937610 Score = 147 bits (162), Expect = 4e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | ||||| |||||||| | ||||| |||||||| |||||||| |||| Sbjct 351325 CCGCCGCGCAAACGCAAGACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCGGCT 351384 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||||| || || |||||||| || | || || || || || || Sbjct 351385 AAAGTTCGGCCATCTTCTAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGCGGG 351444 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || |||||||| || || ||||||||| ||||| ||||| | || || ||| Sbjct 351445 ATGCCCTCTTTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTGTCCGAAGACTCGACT 351504 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | |||||| || || |||||||| Sbjct 351505 TCGAGGGTGATCGTCTTGCCCGTGAG 351530 Score = 132 bits (146), Expect = 9e-26 Identities = 234/341 (69%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 268253 ATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATG 268312 ||||||||||| ||||| || || | ||| || |||||||| | | ||||||| | Sbjct 352566 ATTTTCCACATGCACTCGACGTAATCTCTCGCGTGTCCCCAATCTCTTTGCGCGTCCAAG 352625 Query 268313 TTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATT 268372 || || | ||| |||||| || || || ||| | | || | | ||| ||| Sbjct 352626 TTACCCAAATACAAGCATTTTTGGTTTCCCGCCTTGATGTTCGCCACGGCCAAAGTAATT 352685 Query 268373 TTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTG 268432 |||| ||| ||||| || || || | | || ||||||||||| | || |||||| Sbjct 352686 TTTCTGGTGACGAAAGTTTCCCCTCTTCTCGGCGATTCGTGGTTGAACAAAATCCCGTTG 352745 Query 268433 CACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTT 268492 ||||||||||| | || | ||| | |||||| || || | ||| || | | || || Sbjct 352746 CACGCGAACATATCGTACGACTCTCTGTAGTTTACAACGGCCCAATACCCCATCAATTTC 352805 Query 268493 GCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGG 268552 || || |||||||| || || || | || |||||||| || || || ||| | Sbjct 352806 GCGACCGCGTACGGCGATCGCGGGTAAAACGGCGTCGTTTCGGACTGCGGAATCTCTTGC 352865 Query 268553 ACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTT 268593 ||||| || | | |||||| ||||| |||||||| ||||| Sbjct 352866 ACTTTACCGTACAACTCGGACGTCGACGCTTGGTAAAACTT 352906 >seq13 Length=1091008 Score = 102 bits (112), Expect = 2e-16 Identities = 302/455 (66%), Gaps = 27/455 (6%) Strand=Plus/Plus Query 173033 AATTTCAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCGCACGTCCT--GA 173090 ||||| ||||| ||| ||| ||||||||||| | ||| | | || || |||| || Sbjct 1061281 AATTTTAAGTTTATCATGGGCGATATTCAATCGGCAGATTTAGTTTCGTACATCCTACGA 1061340 Query 173091 AGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGT 173150 | | ||||| || || || || |||||||| || ||||| || || ||||| ||||||| Sbjct 1061341 A--ACGAAAATATCGATACCATCATGCACTTCGCGGCGCAAACGCACGTGGATAACTCGT 1061398 Query 173151 TCGGTAACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAAT 173210 |||| ||||| | || || || |||||| | | || || |||||| | | || | Sbjct 1061399 TCGGGAACTCCTTTGCGTTCACGGAAAACAACATTTTGGGCACGCACGTTTTATTAGAGT 1061458 Query 173211 -GCGCGAGGCTCTATGGCGGT---GTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTA 173266 | || | | || |||| || || ||||| | | || || || |||||||| Sbjct 1061459 CGTGCAAAACGCT----CGGTACCATCAAGAGGTTCTTACACGTCTCCACGGACGAAGTG 1061514 Query 173267 TACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGA----TGAACACTCG---TCCCT 173319 ||||| || || || | | ||| ||||||| || ||| || | || Sbjct 1061515 TACGGGGAAAG----CTCGTACGAGTTGAACGCCTCGAACACCGAGCACGCGAGTTTACT 1061570 Query 173320 CGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATG-ATGGCACGTGCAT 173378 || || || || || ||| |||| | ||||| || || |||||| || || | || | Sbjct 1061571 AGAACCGACGAATCCGTATTCAGCGACGAAGGCGGGCGCAGAAATGCTTGTCATG-GCGT 1061629 Query 173379 ATCACAC-ATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCG 173437 | | || || ||| | | || || | ||| | || ||||| ||||| || || Sbjct 1061630 A-CGGACGCTCTTACGACTTGCCGTATCTCATCACGAGAGGAAACAACGTGTACGGGCCA 1061688 Query 173438 CATCAGTTCCCCGAAAAAATGATCCCAAAATTTAT 173472 || ||||| || |||||| ||| || |||||||| Sbjct 1061689 CACCAGTTTCCGGAAAAAGCGATTCCGAAATTTAT 1061723 >seq11 Length=146238 Score = 86.0 bits (94), Expect = 1e-11 Identities = 171/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 173033 AATTTCAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCGCACGTCCT--GA 173090 ||||| ||||| ||| ||| ||||||||||| | ||| | | || || | | || Sbjct 14135 AATTTTAAGTTTATCATGGGCGATATTCAATCGGCAGATTTAGTCTCGTACATTTTACGA 14194 Query 173091 AGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGT 173150 | | ||||| || || || || |||||||| || ||||| || || ||||| ||||||| Sbjct 14195 AAC--GAAAATATCGATACCATCATGCACTTCGCGGCGCAAACGCACGTGGATAACTCGT 14252 Query 173151 TCGGTAACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAAT 173210 |||| || || | || || || | |||||| | | || || ||||| | || || | Sbjct 14253 TCGGGAATTCCTTTGCTTTCACGAAAAACAACATTTTGGGCACGCACGTGTTGCTAGAGT 14312 Query 173211 -GCGCGAGGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATAC 173269 | || | || |||| || | || ||| | |||| || || |||||||| ||| Sbjct 14313 CGTGCAAAATGCT-TGGCACCATCAAACGCTTCTTGCATGTCTCCACGGACGAAGTGTAC 14371 Query 173270 GGCGAGAGC 173278 || || ||| Sbjct 14372 GGGGAAAGC 14380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622158074120