Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq16 93.3 3e-14 >seq16 Length=955652 Score = 93.3 bits (102), Expect = 3e-14 Identities = 210/315 (67%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 37812 TTTGAAAACGCCGACACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGC 37871 ||||| | ||| | |||||||| || ||||| || || ||| |||| ||| | Sbjct 16823 TTTGAGCAAGCCAAAACGCACGACAATTTATGGAATGCTGCGCAACGCGAGCTCGTGTAC 16764 Query 37872 GAGGGTAAGATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCT 37931 | || || |||||| | |||||||||||||||| |||||||| |||||||||| Sbjct 16763 GGTGGCAAAATGCATGGATTTATGCGCATGTATTGGGCAAAGAAAATACTGGAATGGTCC 16704 Query 37932 GATGATGCTCAGACCGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGAC 37991 ||| | | | | ||| | || |||||||| | | || ||| | | || Sbjct 16703 GATACTCCCGAAAACGCTTTGAAATACGCCATCGCTTTGAACGATCGTTGGTCGCTCGAT 16644 Query 37992 GGGCGTGATCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGA 38051 || | ||||| | |||||||||||| || ||||||| || ||| | |||||| | Sbjct 16643 GGAAGAGATCCGAGCGGTTACGTCGGATGCATGTGGTCCATCGTCGGCGTGCACGATCAA 16584 Query 38052 GCCTG----GCGCGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATG 38107 | || | |||||| || | ||| || |||||||||||| |||| ||| || Sbjct 16583 GGGTGGAAAGAGCGAGA----GATATTCGGGAAAATTCGGTACATGGCTTACAGCGGCTG 16528 Query 38108 TGTTAGGAAGTTTAA 38122 | | ||| ||||| Sbjct 16527 CGAGAAGAAATTTAA 16513 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| |||| ||||| || | ||| ||||||||| ||||||||||| ||| Sbjct 707514 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707573 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || || ||||| ||||| || |||| |||||||||||| ||| Sbjct 707574 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707633 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | || ||||| || || ||| | | | | || | ||| ||| | Sbjct 707634 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACT 707693 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| || ||||| || || | || || || ||||||||||| Sbjct 707694 TCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| |||| ||||| || | ||| ||||||||| ||||||||||| ||| Sbjct 707742 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707801 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || |||| || || ||||| ||||| || |||| |||||||||||| Sbjct 707802 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCC 707855 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| |||| ||||| || | ||| ||||||||| ||||||||||| ||| Sbjct 707970 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 708029 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || |||| || || ||||| ||||| || |||| |||||||||||| Sbjct 708030 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCC 708083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062298376842