Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq12 165 2e-35 seq17 147 5e-30 seq16 120 7e-22 seq7 120 7e-22 >seq12 Length=1122692 Score = 165 bits (182), Expect = 2e-35 Identities = 846/1330 (64%), Gaps = 52/1330 (4%) Strand=Plus/Plus Query 325123 GATGTCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCATCCGGTTCCGATACCACTCGA 325182 || |||| | | |||||| | ||||| || |||||||| ||||||||||| | Sbjct 1063938 GACGTCTCTCGCGTTGTAGTTTGGAATCGAAGTAGACCATCCCGTTCCGATACCTTCGGC 1063997 Query 325183 TCCATTCACCAGGATACTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTATCGCC 325242 || || | || | | | |||||||| |||| |||||| ||||| ||||| | || Sbjct 1063998 GCCGTTAATCAAAACAGTTGGAATAACCGGCATGTAATACGTCGGTTCAATCTTTTGACC 1064057 Query 325243 GTCGTCGTACATATATTTCAGAAGATTGTCGTCCGTATCGACGAAAAC----CTGTCGAG 325298 ||| |||| | || |||| | |||||| || ||| || ||| | | Sbjct 1064058 GTCTTCGTCGTTGTAGTTCAACAACGCGTCGTCGCATTCCGGGAATACAACTCTGGCCAA 1064117 Query 325299 TCTGAGGGTTCAGTTTCatatatatatatCGTGCACTCGCGTGATCCTTACCACCCTGCA 325358 ||| | || | || | || || || | |||||| ||||| || || |||| Sbjct 1064118 -CTGCGC---CAAACGCGTAAAAATGTAACGCGGCGACGCGTGGTCCTTCCCGCCTTGCA 1064173 Query 325359 ATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAAT 325418 | | || ||| ||||| || ||| | ||| |||||||||| || | || || ||| Sbjct 1064174 AACGCGTACCAAACTGACCGCTCGGGACTAACAAGTTGATGTTGTTCGTCCCAACGAAAT 1064233 Query 325419 CCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTAT 325478 | || || || || ||||| ||| ||||| |||||||| |||||||||||| | Sbjct 1064234 CTTGAGCGAGATTAACGATTGTCGACGCAAGAGACGCTTCGCCGTGGTGATAGGCGGAGT 1064293 Query 325479 GCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGA 325538 | || | ||||||||||| || || || || || | ||| | | |||| || | ||||| Sbjct 1064294 GTTCCGAGACGTAACCGCTCAATTGCGCGACTTTGATGTCCGACTTCAACTTTCTCTTGA 1064353 Query 325539 AAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGC 325598 | ||| | || ||||| ||||| ||||| ||||||||||||| | | || ||||| Sbjct 1064354 AGCACGAAAACATAACTTTTCGTTGCGAAGGCTTGAAACCATCAATGGCGGATGGAATAG 1064413 Query 325599 TTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTC-GGGAACG 325657 || | ||| | ||||| | ||| | || |||| ||| || || | || Sbjct 1064414 AACGCATTAAATCCGCCAAGGAGAAGAGAATCAACTCTTTGTTGATAAACTCATCGTACC 1064473 Query 325658 GGAACCTCGGGCTTCTTGTGGTCAAGTTGATTTCCTGGTTCGTATGCCGTCATCCACTCC 325717 | | || || ||| ||||| | ||||| |||||| || | || |||| Sbjct 1064474 GAACGGTCTCGCCGCTT-TGGTCCAAGAACGTTCCTTCTTCGTACGCGGACAACCACCTT 1064532 Query 325718 TTGCGATCCTCGGCTCGTGACTTGTTGAAAGAACGGTCAATGAGCTCTC---CGGAATCG 325774 || ||||| ||| ||| |||| ||| || ||| || | |||| || ||| Sbjct 1064533 TTACGATCTTCGACTCTCTTCTTGGAGAAGGACATGTCGATCAAATCTCCGTCGCCGTCG 1064592 Query 325775 GAAGTCCACATAAACGTCTTCATGAGAGACTTCAGATTGC--TGAAGTATTTTTTGGCAT 325832 || ||| ||| ||||| | | || ||| || || ||| || | || || | Sbjct 1064593 GATTCCCAGCAAAAAGTCTTGCGGTGCAAC-TCA-ATCGCAGCGAAATACTCCTTCGCTT 1064650 Query 325833 C---TGCACTGGAACTCGTACCAAGCCCCTTAAAATACTTGGTCGTCCATTTCTTCATAT 325889 | ||| |||| |||||| || || || | |||||| | | ||| ||| || Sbjct 1064651 CTTTTGCCGTGGA---CGTACCGAGACCTTTGTAGTACTTGATGGCCCA-GCCTT--TAC 1064704 Query 325890 CTTGTGTCTTCACGA------AGTCTTCGAAGTCAGGAAGACTGAAAAATTCTCTGACTT 325943 | | | || |||| ||| |||| | || || | || ||||| | | || Sbjct 1064705 CGTCGTTGTTGACGAGCTTCCAGTTTTCGTATTCCGGCAACGTGTAAAATACGCGCGTTT 1064764 Query 325944 CTTTTCCCTTCCTGGCAACTACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTT 326003 || |||||| | || | ||| ||||||||||||| | |||||| || ||||||| Sbjct 1064765 GTTGGCCCTTCGTCGCCTTGATGATGGGCGTGATGAACTCCAACAAGAAACCCGGAATTT 1064824 Query 326004 CTAGAAGATTAGGGAAACAGCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTC 326063 | | | ||||| || | |||||| || | | ||| ||||| | | Sbjct 1064825 TCAACAAAGACGGGAAGTGCGCGTGCAGAAAGTTGATTAACAAACCTTTGATGTGCGAAC 1064884 Query 326064 CGTCAACATCCGCGTCGGTCATGATCATCACATGACCGTAACGAAGCG------AGGACG 326117 | || ||| || ||||||||||||| | ||||| || | || ||| Sbjct 1064885 CATCGTGATCTTGATCCGTCATGATCATCAACTTCCCGTATCGCAACGTCTTGATGGAAT 1064944 Query 326118 TGTCTTTGTACACTTTACCGGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTT 326177 || | |||| ||| ||| ||| | ||| | ||| ||||||| |||||||| Sbjct 1064945 CTTCGTCGTACGTTTTGCCGTGTTGCAAGCCCAAAATCTGTTTGATGTGGGTGATTTCCA 1065004 Query 326178 CGTTCTTCGTGATGCTTG--CCACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAG 326235 | || ||| | | |||| | | || || ||||| |||||||||| || || | | Sbjct 1065005 CATTGTTCTT--TACTTGATCAAACGAAGCGTCGCGAACGTTCAATAACTTCCCTCTCAA 1065062 Query 326236 AGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGC 326295 || ||||| || || | || | ||||| | ||||| || | | || | ||| Sbjct 1065063 CGGAAACACCCCGTAGTTGTCTCTTCCGACGATGGACAAACCGGAAACCGCCA---ACGC 1065119 Query 326296 T---GCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATTTTGCTGTTATTCGTTC-CAG 326351 | || ||||||||||| || | ||| || ||||| ||| || | ||| | | | Sbjct 1065120 TTTGGCAGAATCCCCCTCGGTTAAAATCAGCGTGCAGTCTTTCGAGT--TGCGTCCGCCG 1065177 Query 326352 CCCATG-TAGCATCGTTGAGTTTGGGAATTCCAGTCACTCGGATCTTCTTGGTACCGTCG 326410 | || | ||||||| | || ||||| ||||||| ||| | |||| ||| ||| Sbjct 1065178 GCGTTGTTCGCATCGTCCAACTTCGGAATACCAGTCAATCGCAATCGCTTGACACCATCG 1065237 Query 326411 GTCTTCTTCA 326420 |||||||||| Sbjct 1065238 GTCTTCTTCA 1065247 Score = 116 bits (128), Expect = 9e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || ||||| || | ||||||||||| ||||| || ||||| Sbjct 916977 TTCTTTTTGGATGTTGTAATCCGCGAGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAA 917036 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||||| || || || || || || || || ||||||||||||||||| Sbjct 917037 AATCAATCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCTTGAATTTTCGCTTTCACGTT 917096 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | || || || |||||||||||||| || ||||| |||| ||| || Sbjct 917097 GTCGATCGTGTCCGAGGACTCGACTTCGAGCGTGATGGTTTTCCCAGTCAAAGTTTT 917153 >seq17 Length=937610 Score = 147 bits (162), Expect = 5e-30 Identities = 277/406 (68%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 72412 TTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAA 72471 ||| ||||||||| |||| |||||||| || ||||||||||| ||||| ||| | |||| Sbjct 352902 TTTACCAAGCGTCGACGTCCGAGTTGTACGGTAAAGTGCAAGAGATTCCGCAGTCCGAAA 352843 Query 72472 ATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCT 72531 || |||||||| || ||| || |||| || || || ||| | |||||| | Sbjct 352842 CGACGCCGTTTTACCCGCGATCGCCGTACGCGGTCGCGAAATTGATGGGGTATTGGGCCG 352783 Query 72532 GTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACG 72591 | ||| ||| | |||||||| | |||| | |||||| ||||| ||||| |||| Sbjct 352782 TTGTAAACTACAGAGAGTCGTACGATATGTTCGCGTGCAACGGGATTTTGTTCAACCACG 352723 Query 72592 AGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATA 72651 | || | ||||| | ||||| || | ||||| || || || ||||| | Sbjct 352722 AATCGCCGAGAAGAGGGGAAACTTTCGTCACCAGAAAAATTACTTTGGCCGTGGCGAACA 352663 Query 72652 TTTTCAA---TGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATT 72708 |||| || | |||||||| ||||| | ||||| | || || ||||||||| Sbjct 352662 ---TCAAGGCGGGAAACCAAAAATGCTTGTATTTGGGTAACTTGGACGCGCAAAGAGATT 352606 Query 72709 GGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGG 72768 ||||| | |||| |||||||| || |||||| || | |||||||| |||| Sbjct 352605 GGGGACACGCGAGAGATTACGTCGAGTGCATGTGGAAAATATTACAACAAGACGTACCGG 352546 Query 72769 ATGACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTT 72814 | || || ||| | || || || | | || | |||||| ||||| Sbjct 352545 AAGATTACGTGGTCGCGACTGGCGAGATGACCACCGTTCGCGAGTT 352500 Score = 138 bits (152), Expect = 3e-27 Identities = 133/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||||||||| | || || || ||||||||||||||||| ||||| Sbjct 351360 TTCTTTTTGAATGTTATAGTCGGCTAAAGTTCGGCCATCTTCTAATTGTTTTCCGGCGAA 351419 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||||| ||| ||||| || ||||| || ||||||||||| || ||||| Sbjct 351420 GATCAATCGCTGCTGATCCGGCGGGATGCCCTCTTTGTCTTGGATTTTCGCCTTGACGTT 351479 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || |||| || || || |||||||| ||||||||||| || || || Sbjct 351480 GTCGATAGTGTCCGAAGACTCGACTTCGAGGGTGATCGTCTTGCCCGTGAG 351530 >seq16 Length=955652 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||||| | ||| | ||||||||||| || || || ||||| Sbjct 707322 TCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAA 707381 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| ||| ||||| ||||| || || ||||| ||||| || ||||| Sbjct 707382 ATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTG 707441 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || ||||| | |||||| || || || |||| |||||||||| Sbjct 707442 TCGATGGTGTCGGAAGACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACG 707501 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 707502 AAGATTTGCAT 707512 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||||| | ||| | ||||||||||| || || || ||||| Sbjct 707550 TCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAA 707609 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| ||| ||||| ||||| || || ||||| ||||| || ||||| Sbjct 707610 ATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTG 707669 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || ||||| | |||||| || || || |||| |||||||||| Sbjct 707670 TCGATGGTGTCGGAAGACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACG 707729 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 707730 AAGATTTGCAT 707740 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||||| | ||| | ||||||||||| || || || ||||| Sbjct 707778 TCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAA 707837 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| ||| ||||| ||||| || || ||||| ||||| || ||||| Sbjct 707838 ATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTG 707897 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || ||||| | |||||| || || || |||| |||||||||| Sbjct 707898 TCGATGGTGTCGGAAGACTCAACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACG 707957 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 707958 AAGATTTGCAT 707968 >seq7 Length=519835 Score = 120 bits (132), Expect = 7e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || ||||| || || | ||||||||||||||||| ||||| || |||||| Sbjct 260395 TCTTTTTGAATGTTATAATCCGCCAAAGTGCGTCCGTCTTCTAACTGTTTCCCGGCGAAG 260454 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| || | ||||| ||||| || || ||||||||||| || ||||| Sbjct 260455 ATCAACCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTCGCCTTGACGTTG 260514 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 || || | || ||||| ||||| | |||||||| || || |||| Sbjct 260515 TCGATGGTGTCCGAGGATTCCACTTCCAAGGTGATCGTTTTGCCCGTCA 260563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654082599238