Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq12 154 3e-32 seq17 147 5e-30 >seq12 Length=1122692 Score = 154 bits (170), Expect = 3e-32 Identities = 712/1113 (64%), Gaps = 44/1113 (4%) Strand=Plus/Plus Query 297457 CGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTT 297516 |||||| ||||| || || ||||| | || ||| ||||| || ||| | ||| |||| Sbjct 1064151 CGCGTGGTCCTTCCCGCCTTGCAAACGCGTACCAAACTGACCGCTCGGGACTAACAAGTT 1064210 Query 297517 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 297576 |||||| || | || || |||| || || || || ||||| ||| ||||| || Sbjct 1064211 GATGTTGTTCGTCCCAACGAAATCTTGAGCGAGATTAACGATTGTCGACGCAAGAGACGC 1064270 Query 297577 TTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCAC 297636 |||||| |||||||||||| || || | ||||||||||| || || || || || | Sbjct 1064271 TTCGCCGTGGTGATAGGCGGAGTGTTCCGAGACGTAACCGCTCAATTGCGCGACTTTGAT 1064330 Query 297637 GTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAA 297696 ||| | | |||| || | |||||| ||| | || ||||| ||||| ||||| ||||| Sbjct 1064331 GTCCGACTTCAACTTTCTCTTGAAGCACGAAAACATAACTTTTCGTTGCGAAGGCTTGAA 1064390 Query 297697 ACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTC 297756 |||||||| | | || ||||| || | ||| | ||||| | ||| | || Sbjct 1064391 ACCATCAATGGCGGATGGAATAGAACGCATTAAATCCGCCAAGGAGAAGAGAATCAACTC 1064450 Query 297757 CTTGTCGATGAAGTC-GGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGATTTCCTG 297815 |||| ||| || || | || | | || || ||| ||||| | ||||| Sbjct 1064451 TTTGTTGATAAACTCATCGTACCGAACGGTCTCGCCGCTT-TGGTCCAAGAACGTTCCTT 1064509 Query 297816 GTTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCTCGTGACTTGTTGAAAGAACGGT 297875 |||||| || | || |||| || ||||| ||| ||| |||| ||| || || Sbjct 1064510 CTTCGTACGCGGACAACCACCTTTTACGATCTTCGACTCTCTTCTTGGAGAAGGACATGT 1064569 Query 297876 CAATGAGCTCTC---CGGAATCGGAAGTCCACATAAACGTCTTCATGAGAGACTTCAGAT 297932 | || | |||| || ||||| ||| ||| ||||| | | || ||| || Sbjct 1064570 CGATCAAATCTCCGTCGCCGTCGGATTCCCAGCAAAAAGTCTTGCGGTGCAAC-TCA-AT 1064627 Query 297933 TGC--TGAAGTATTTTTTGGCATC---TGCACTGGAACTCGTACCAAGCCCCTTAAAATA 297987 || ||| || | || || || ||| |||| |||||| || || || | || Sbjct 1064628 CGCAGCGAAATACTCCTTCGCTTCTTTTGCCGTGGA---CGTACCGAGACCTTTGTAGTA 1064684 Query 297988 CTTGGTCGTCCATTTCTTCATATCTTGTGTCTTCACGA------AGTCTTCGAAGTCAGG 298041 |||| | | ||| ||| || | | | || |||| ||| |||| | || || Sbjct 1064685 CTTGATGGCCCA-GCCTT--TACCGTCGTTGTTGACGAGCTTCCAGTTTTCGTATTCCGG 1064741 Query 298042 AAGACTGAAAAATTCTCTGACTTCTTTTCCCTTCCTGGCAACTACGATAGGCGTGATGAA 298101 | || ||||| | | || || |||||| | || | ||| ||||||||||| Sbjct 1064742 CAACGTGTAAAATACGCGCGTTTGTTGGCCCTTCGTCGCCTTGATGATGGGCGTGATGAA 1064801 Query 298102 CTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAGCTATGGAAAAAGTTCAT 298161 || | |||||| || ||||||| | | | ||||| || | |||||| || Sbjct 1064802 CTCCAACAAGAAACCCGGAATTTTCAACAAAGACGGGAAGTGCGCGTGCAGAAAGTTGAT 1064861 Query 298162 GACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCACATGACC 298221 | | ||| ||||| | || || ||| || ||||||||||||| | || Sbjct 1064862 TAACAAACCTTTGATGTGCGAACCATCGTGATCTTGATCCGTCATGATCATCAACTTCCC 1064921 Query 298222 GTAACGAAGCG------AGGACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCGAGAAT 298275 ||| || | || ||| || | |||| ||| ||| ||| | ||| | ||| Sbjct 1064922 GTATCGCAACGTCTTGATGGAATCTTCGTCGTACGTTTTGCCGTGTTGCAAGCCCAAAAT 1064981 Query 298276 TTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG--CCACGGATGCATCGCGG 298333 ||||||| |||||||| | || ||| | | |||| | | || || ||||| Sbjct 1064982 CTGTTTGATGTGGGTGATTTCCACATTGTTCTT--TACTTGATCAAACGAAGCGTCGCGA 1065039 Query 298334 ACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGAC 298393 || ||||||| || || | | || ||||| || || | || | ||||| | |||| Sbjct 1065040 ACGTTCAATAACTTCCCTCTCAACGGAAACACCCCGTAGTTGTCTCTTCCGACGATGGAC 1065099 Query 298394 AGCCCTGCGATTGCAAGTGTCGCT---GCGGAATCCCCCTCCGTCAGAATGAGAGTGCAC 298450 | || | | || | |||| || ||||||||||| || | ||| || ||||| Sbjct 1065100 AAACCGGAAACCGCCA---ACGCTTTGGCAGAATCCCCCTCGGTTAAAATCAGCGTGCAG 1065156 Query 298451 ATTTTGCTGTTATTCGTTC-CAGCCCATG-TAGCATCGTTGAGTTTGGGAATTCCAGTCA 298508 ||| || | ||| | | | | || | ||||||| | || ||||| ||||||| Sbjct 1065157 TCTTTCGAGT--TGCGTCCGCCGGCGTTGTTCGCATCGTCCAACTTCGGAATACCAGTCA 1065214 Query 298509 CTCGGATCTTCTTGGTACCGTCGGTCTTCTTCA 298541 ||| | |||| ||| ||||||||||||| Sbjct 1065215 ATCGCAATCGCTTGACACCATCGGTCTTCTTCA 1065247 >seq17 Length=937610 Score = 147 bits (162), Expect = 5e-30 Identities = 277/406 (68%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 68401 TTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAA 68460 ||| ||||||||| |||| |||||||| || ||||||||||| ||||| ||| | |||| Sbjct 352902 TTTACCAAGCGTCGACGTCCGAGTTGTACGGTAAAGTGCAAGAGATTCCGCAGTCCGAAA 352843 Query 68461 ATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCT 68520 || |||||||| || ||| || |||| || || || ||| | |||||| | Sbjct 352842 CGACGCCGTTTTACCCGCGATCGCCGTACGCGGTCGCGAAATTGATGGGGTATTGGGCCG 352783 Query 68521 GTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACG 68580 | ||| ||| | |||||||| | |||| | |||||| ||||| ||||| |||| Sbjct 352782 TTGTAAACTACAGAGAGTCGTACGATATGTTCGCGTGCAACGGGATTTTGTTCAACCACG 352723 Query 68581 AGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATA 68640 | || | ||||| | ||||| || | ||||| || || || ||||| | Sbjct 352722 AATCGCCGAGAAGAGGGGAAACTTTCGTCACCAGAAAAATTACTTTGGCCGTGGCGAACA 352663 Query 68641 TTTTCAA---TGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATT 68697 |||| || | |||||||| ||||| | ||||| | || || ||||||||| Sbjct 352662 ---TCAAGGCGGGAAACCAAAAATGCTTGTATTTGGGTAACTTGGACGCGCAAAGAGATT 352606 Query 68698 GGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGG 68757 ||||| | |||| |||||||| || |||||| || | |||||||| |||| Sbjct 352605 GGGGACACGCGAGAGATTACGTCGAGTGCATGTGGAAAATATTACAACAAGACGTACCGG 352546 Query 68758 ATGACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTT 68803 | || || ||| | || || || | | || | |||||| ||||| Sbjct 352545 AAGATTACGTGGTCGCGACTGGCGAGATGACCACCGTTCGCGAGTT 352500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879703256350