Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq12 107 2e-18 seq7 98.7 1e-15 seq16 95.1 1e-14 >seq1 Length=1352724 Score = 120 bits (132), Expect = 3e-22 Identities = 333/496 (67%), Gaps = 15/496 (3%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || |||||||| ||||||||| ||||||| | || ||| || || |||| |||| Sbjct 25545 GAGGCCAAGTTACAAACGGCAGTTTCTTCCGGCGAGGTGAATTCGACGATCTCTGTGCAC 25604 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || || || || ||||||| |||| || ||||| ||| |||||| || || Sbjct 25605 AAGTTGGACGATTTGATCGTGCCCAAATTTTGTTGGTTCGACTTGCGGTTGCACGCATCC 25664 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 ||| |||| ||||||||| | || ||||||||||| | ||||| ||| || || || | Sbjct 25665 TTGAACAACATGTACGGGTTACCAGTTTCCACTTGCGCTTCAAGAAT--CGCAAACCAAA 25722 Query 154767 -CTTC-GCGCCTCAACTTGACAAGTAAATC-GATTTTCGCTCTCATA-TTGTTCGTACAG 154822 || | | || | | | | | | | | ||||| | || || ||| | ||||| Sbjct 25723 GCTGCTGGGCGTTGA-TCGTCTTCTTACCCTTGTTTTCTTTTTCGTACTTGGT-GTACAA 25780 Query 154823 TTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACA-GCGGTCGGGACACATCA 154881 |||||||||| || | || |||||||| || || || ||||| ||||| | Sbjct 25781 AGCTTCAAACTCTTCACCCCAGCATTCGGACAAACCCGGGCACTCGTTCGGG-CACATTA 25839 Query 154882 ATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGT 154941 | | |||| | |||||| || || | |||||| |||||||| | ||||||| ||| Sbjct 25840 ACGTCCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACAAACCGT 25899 Query 154942 ACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTC-AAAAAA 155000 | ||||| ||||| || | ||||| ||| || ||| | || || | | Sbjct 25900 AAAACAAGTCACGAGCTCTCGCTTCTTC-CTTCCCGTGGTTCTTTCGCAAGTCGAGCCAG 25958 Query 155001 TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---T 155057 || | ||||| | ||||||||| || | || | ||| | ||||| ||||| || Sbjct 25959 TCGAAGATGTCAGAGTGCCACGGTTCGAGGTAAATGGCAAAAGCGCCCTTGCGCTTACCG 26018 Query 155058 CCTCCTTGATCCACGT 155073 || ||||| ||||||| Sbjct 26019 CCGCCTTGGTCCACGT 26034 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 153674 GTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGT 153733 ||| |||||||| ||| |||||||| || | | | | || | |||||||| || || Sbjct 24557 GTCGACGGTAAACTTGATCGCATCCGCAGCAGCTCTGGATCTGAGGTAATACATACCAGT 24616 Query 153734 TTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAA-TAACGCGAAACTGGGCT 153792 ||||| ||| ||||| | ||| | ||| | | ||| || | || || | ||| | Sbjct 24617 CTTCAATCCAGACTTCCACGCGTGGAAGTGTAAGGAAGTCAACTTAC-CGGAGTTGGCAT 24675 Query 153793 GCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCA 153852 | || ||||| |||||||| ||| ||||| || ||||| ||| |||| |||| Sbjct 24676 CAGACATGTGGACGTTGAACGACTGCGACTGGTCGATAAACGCGCCTCGAGCGGCAGCCA 24735 Query 153853 TGTCAATCAAGTTTTTAC--TGCTC-ATTTCCCACACAGTTTTGTA 153895 |||| | ||| | ||| |||| |||||||||||||| ||||| Sbjct 24736 TGTCCACCAA---TATACGTTGCTTGATTTCCCACACAGTCTTGTA 24778 >seq12 Length=1122692 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| ||||| | | ||| | || | || ||||||||||| ||||||||||| ||| Sbjct 916942 CCGCCTCGCAAACGCAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCGCG 917001 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||||| | ||| || ||||| |||| | ||||||||||| || ||| Sbjct 917002 AGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCGGA 917061 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| | |||| ||||| || || | || || || || || Sbjct 917062 ATGCCCTCCTTGTCTTG-AATTTTCGCTTTCACGTTGTCGATCGTGTCCGAGGACTCGAC 917120 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTT 64428 ||| | || | ||| || || ||||||||||| Sbjct 917121 TTCGAGCGTGATGGTTTTCCCAGTCAAAGTTTT 917153 >seq7 Length=519835 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||| || |||||||||||||| ||||| || | ||||| ||||||| | ||| || || Sbjct 260388 CGTGGACTCTTTTTGAATGTTATAATCCGCCAAAGTGCGTCCGTCTTCTAACTGTTTCCC 260447 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || | |||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 260448 GGCGAAGATCAACCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTT 260501 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/139 (73%), Gaps = 8/139 (6%) Strand=Plus/Minus Query 115367 CACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCCGGCGAG 115426 |||||||| || || ||||||||||| ||||| | |||||| |||| |||| | || | Sbjct 85084 CACGGTTTGCACGTGCACGAATTCGGAGACACGACCAACGGGTGCATGTCCACTGGTCCG 85025 Query 115427 CATTTCAACCCGTTTAACCAAGAT----CACGGCGCACCGAACGCACCCGTCCGCCACGT 115482 || || |||||| | |||||| |||||||| |||| | | ||| | |||| Sbjct 85024 CACTTTAACCCG----AACAAGATGACGCACGGCGCGCCGACGGATTCAGTCAGACACGC 84969 Query 115483 CGGTGATCTGGGCAACGTC 115501 ||| ||| |||| |||||| Sbjct 84968 CGGGGATTTGGGTAACGTC 84950 >seq16 Length=955652 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || || | | ||| | || | ||| || || || || ||||||||||| || Sbjct 707286 CCGCCTCGTAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707345 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | ||||||| | |||||| ||||| |||| | |||||||| || || || Sbjct 707346 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707405 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| || || | || || | || ||| Sbjct 707406 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACT 707465 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| ||||| |||||||| || ||||| |||||||| Sbjct 707466 TCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707512 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | ||| | | ||| | || | ||| || || || || ||||||||||| || Sbjct 707514 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707573 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | ||||||| | |||||| ||||| |||| | |||||||| || || || Sbjct 707574 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707633 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| || || | || || | || ||| Sbjct 707634 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACT 707693 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| ||||| |||||||| || ||||| |||||||| Sbjct 707694 TCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | ||| | | ||| | || | ||| || || || || ||||||||||| || Sbjct 707742 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707801 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | ||||||| | |||||| ||||| |||| | |||||||| || || || Sbjct 707802 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707861 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| || || | || || | || ||| Sbjct 707862 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCAACT 707921 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| ||||| |||||||| || ||||| |||||||| Sbjct 707922 TCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644668843240