Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12 113 4e-20 seq17 87.8 2e-12 seq7 84.2 2e-11 seq1 84.2 2e-11 >seq12 Length=1122692 Score = 113 bits (124), Expect = 4e-20 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||||||||||||||| || || || | | |||| || ||||| |||||||| || Sbjct 916941 GCCGCCTCGCAAACGCAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCGC 917000 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | | ||| || | |||||||||| | || | ||||| |||||||| || Sbjct 917001 GAGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCGG 917060 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| |||| | ||| | ||| || | ||||| | ||||| Sbjct 917061 AATGCCCTCCTTGTC-TTGAATTTTCGCTTTCACGTTG-TCGATCGTGTCCGAGGACTCG 917118 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 || |||| ||| | ||||| ||||||| |||||| Sbjct 917119 ACTTCGAGCGTGATGGTTTTCCCAGTCAAAGTTTT 917153 >seq17 Length=937610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| ||||||||||| || || || | | | || || ||||||||||| |||||| Sbjct 351324 GCCGCCGCGCAAACGCAAGACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCGGC 351383 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || | |||||| |||| |||| | ||||| || ||||| || Sbjct 351384 TAAAGTTCGGCCATCTTCTAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGCGG 351443 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| |||||| || | | || | ||||| | ||||| || Sbjct 351444 GATGCCCTCTTTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTGTCCGAAGACTCGAC 351503 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAA 138607 |||| || | ||| || || || || || |||| ||| Sbjct 351504 TTCGAGGGTGATCGTCTTGCCCGTGAGCTGTTATACATAAA 351544 >seq7 Length=519835 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| || || || || || |||| | ||||| ||||||||||| || || | Sbjct 260359 CCGCCTCTCAGGCGTAACACCAAGTGTAACGTGGACTCTTTTTGAATGTTATAATCCGCC 260418 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || | ||||| |||| |||| | ||||| ||||| ||||| Sbjct 260419 AAAGTGCGTCCGTCTTCTAACTGTTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGAGGG 260478 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || | | || | |||||| | || ||||| Sbjct 260479 ATGCCTTCCTTGTCTTGGATTTTCGCCTTGACGTTGTCGATGGTGTCCGAGGATTCCACT 260538 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAA 138605 || | || | |||||| || ||| | |||||| ||| Sbjct 260539 TCCAAGGTGATCGTTTTGCCCGTC--ACTTTTTATAAA 260574 >seq1 Length=1352724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTC 153655 || || || |||| ||||| ||||| || ||||| |||| | || | | |||||||| Sbjct 25539 GCGATGGAGGCCAAGTTACAAACGGCAGTTTCTTCCGGCGAGG-TGAATTCGACGATCTC 25597 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | ||| | |||| |||| || |||||||||||| || || ||||| ||||| Sbjct 25598 TGTGCACAAGTTGGACGATTTGATCGTGCCCAAATTTTGTTGGTTCGACTTGCGGTTGCA 25657 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 153763 ||| || ||||| | ||||||||| || || || ||||||| ||| Sbjct 25658 CGCATCCTTGAACAACATGTACGGGTTACCAGTTTCCACTTGCGCTTC 25705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262269731120