Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq17 152 5e-32 seq16 152 5e-32 seq7 152 5e-32 seq14 134 1e-26 seq12 120 3e-22 >seq17 Length=937610 Score = 152 bits (168), Expect = 5e-32 Identities = 168/221 (76%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| || ||||| ||||| || | || || ||||||||||| || || ||| | Sbjct 351325 CCGCCGCGCAAACGCAAGACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCGGCT 351384 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| |||| |||||||| ||| ||||||||||||||||||| || || Sbjct 351385 AAAGTTCGGCCATCTTCTAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGCGGG 351444 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| ||||| ||||||| ||||| |||| |||| ||||||| | |||||| Sbjct 351445 ATGCCCTCTTTGTCTTGGATTTTCGCCTTGACGTTG-TCGATAGTGTCCGAAGACTCGAC 351503 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAA 127106 ||||| ||| | ||| ||||| || || || |||| ||| Sbjct 351504 TTCGAGGGTGATCGTCTTGCCCGTGAGCTGTTATACATAAA 351544 >seq16 Length=955652 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || ||||| ||||||||||| || | ||||||||| || || || ||||||||| || Sbjct 707286 CCGCCTCGTAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707345 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | || |||| ||| || || ||| | ||||||||||||||||| || || Sbjct 707346 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707405 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| ||| ||| ||||| |||| |||| |||||| | | |||||| Sbjct 707406 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTG-TCGATGGTGTCGGAAGACTCGAC 707464 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | |||||||| |||| ||| || || || || ||||| Sbjct 707465 TTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707512 Score = 145 bits (160), Expect = 7e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || ||||||||||| || | ||||||||| || || || ||||||||| ||| ||| | Sbjct 707523 AAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTG 707582 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || |||| ||| || || ||| | ||||||||||||||||| || || || || ||| Sbjct 707583 CCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCC 707642 Query 127016 TTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 ||||| ||| ||| ||||| |||| |||| |||||| | | ||||||||| | || Sbjct 707643 TTGTCTTGGATCTTCGCCTTGACGTTG-TCGATGGTGTCGGAAGACTCGACTTCCAACGT 707701 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||||||| |||| ||| || || || || ||||| Sbjct 707702 GATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707740 Score = 140 bits (154), Expect = 3e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || ||||||||||| || | ||||||||| || || || ||||||||| ||| ||| | Sbjct 707751 AAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTG 707810 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || |||| ||| || || ||| | ||||||||||||||||| || || || || ||| Sbjct 707811 CCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCC 707870 Query 127016 TTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 ||||| ||| ||| ||||| |||| |||| |||||| | | ||| ||||| | || Sbjct 707871 TTGTCTTGGATCTTCGCCTTGACGTTG-TCGATGGTGTCGGAAGACTCAACTTCCAACGT 707929 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||||||| |||| ||| || || || || ||||| Sbjct 707930 GATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707968 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || ||||||||||| || | ||||||||| || || || ||||||||| ||| ||| | Sbjct 707979 AAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTG 708038 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 || |||| ||| || || ||| | ||||||||||||||||| || || || || Sbjct 708039 CCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGAATTCC 708094 >seq7 Length=519835 Score = 152 bits (168), Expect = 5e-32 Identities = 160/207 (77%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 || |||||||| |||| ||| |||||||||||||| || ||||| ||| ||||| Sbjct 260371 CGTAACACCAAGTGTAACGTGGACTCTTTTTGAATGTTATAATCCGCCAAAGTGCGTCCG 260430 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || |||| |||||| || ||| ||||||| |||||||| || ||||| ||||| |||||| Sbjct 260431 TCTTCTAACTGTTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGAGGGATGCCTTCCTTG 260490 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || ||||||| ||||| |||| |||| |||||||| || ||||| | ||| | Sbjct 260491 TCTTGGATTTTCGCCTTGACGTTG-TCGATGGTGTCCGAGGATTCCACTTCCAAGGTGAT 260549 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAA 127104 ||||||||| ||| | |||||| ||| Sbjct 260550 CGTTTTGCCCGTC--ACTTTTTATAAA 260574 >seq14 Length=1037991 Score = 134 bits (148), Expect = 1e-26 Identities = 304/448 (68%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGC 47191 |||||||||||| |||| |||||| |||||| ||| |||||||||| ||| || ||| Sbjct 66341 GCCGAACGTTTGGTCGCGTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCTCTTTCTGC 66282 Query 47192 GGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCT 47251 | || | | | || | | ||| | ||||| || ||||| || ||||||| | Sbjct 66281 -TCAATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTCACCTTCTCCAACGAGTT 66223 Query 47252 AATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGT 47311 ||||| ||||||||||| |||||| | ||||| || || | || |||| | || Sbjct 66222 GATCTCCAGAGACGAAGGTTTGCACAGAGATTTTGCGTG-CT-TGCT-TTACACGA-TGT 66167 Query 47312 CGATCAA-AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTG 47370 || ||| | | || || | | | || | || || |||| || || | |||| Sbjct 66166 TGAACAACACGCCGGGCGAGGAGAAGTTGAGAAAGATTGTTACCGAGGCGGTTGAAATTG 66107 Query 47371 AGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGA 47430 ||| ||||||| | ||| || |||| | | || || |||||||| || |||| Sbjct 66106 AGAAGGAGTTTGTGTGCGACGCGTTGCCGTGCGCGCTCGTCGGCATGAACGCCGACATGA 66047 Query 47431 TGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGA 47490 ||||| | |||||||| | || ||||| | | ||||| ||||| | | | ||| Sbjct 66046 TGAGAGATTACATCGAGTACGTTGCCGATCACTTGCTCTCGCAGCTCGGCTTTGCGAAGG 65987 Query 47491 TTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550 ||| |||||| ||| || ||||| | ||| | ||||| | | |||||||| | Sbjct 65986 AGTACGACACCGCGAACCCGTTCGACTGGATGGAATTAATTTCTTTGCAAGGCAAGACGA 65927 Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| || ||||| || |||||||| || Sbjct 65926 ACTTCTTTGAGAAACGTGTCGGCGAGTA 65899 >seq12 Length=1122692 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || ||||||||||| || | || || |||||||| || |||||||| | Sbjct 916942 CCGCCTCGCAAACGCAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCGCG 917001 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || |||| |||||| || ||| | |||||||||||||| || || || Sbjct 917002 AGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCGGA 917061 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| |||||| || | |||| |||| ||||||| |||||| Sbjct 917062 ATGCCCTCCTTGTCTTGAATTTTCGCTTTCACGTTG-TCGATCGTGTCCGAGGACTCGAC 917120 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTT 127098 ||||| || | ||||| || |||| |||||| Sbjct 917121 TTCGAGCGTGATGGTTTTCCCAGTCAAAGTTTT 917153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500675181040