Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12 131 2e-25 seq17 127 2e-24 seq16 127 2e-24 >seq12 Length=1122692 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| | |||| |||||||| |||||||| || ||||| || ||| | || Sbjct 916956 CAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCGCGAGAGTTCTCCCGTC 917015 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || || ||||| || ||| | |||||||| |||||||||||||||||||| || || || Sbjct 917016 TTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTC 917075 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||||||||| ||| | || | || | ||||| || |||||||||||||| || | | Sbjct 917076 TTGAATTTTCGCTTTCA-CGTTGTCGATCGTGTCCGAGGACTCGACTTCGAGCGTGATGG 917134 Query 45307 TTTTGCCGGTTAGAGTTTT 45325 |||| || || | |||||| Sbjct 917135 TTTTCCCAGTCAAAGTTTT 917153 >seq17 Length=937610 Score = 127 bits (140), Expect = 2e-24 Identities = 164/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| | | ||| || | |||| || ||||| ||||| || ||||| ||| Sbjct 351322 ATGCCGCCGCGCAAACGCAAGACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCG 351381 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || ||||||||||| ||| | |||||||| ||||| |||||| Sbjct 351382 GCTAAAGTTCGGCCATCTTCTAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGC 351441 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| ||||| ||||| ||||| |||| || | || | ||||| |||||||| Sbjct 351442 GGGATGCCCTCTTTGTCTTGGATTTTCGCCTTGA-CGTTGTCGATAGTGTCCGAAGACTC 351500 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAA 45333 ||||||||| || | ||| ||||| || || || |||| ||| Sbjct 351501 GACTTCGAGGGTGATCGTCTTGCCCGTGAGCTGTTATACATAAA 351544 >seq16 Length=955652 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| | |||| ||| || ||||| ||||| || |||||| | ||| | || Sbjct 707300 CAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTC 707359 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || || || || || ||| | |||||||| ||||| |||||||| || ||||| || || Sbjct 707360 TTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTC 707419 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||| || || |||| || | || | ||||||||||||||||||||| | || | | Sbjct 707420 TTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCGACTTCCAACGTGATGG 707478 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 ||||||| || | ||| || || || ||||||||| ||| Sbjct 707479 TTTTGCCAGTCAAAGTCTTGACGAAGATTTGCATCCCGC 707517 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| | |||| ||| || ||||| ||||| || |||||| | ||| | || Sbjct 707528 CAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTC 707587 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || || || || || ||| | |||||||| ||||| |||||||| || ||||| || || Sbjct 707588 TTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTC 707647 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||| || || |||| || | || | ||||||||||||||||||||| | || | | Sbjct 707648 TTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCGACTTCCAACGTGATGG 707706 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 ||||||| || | ||| || || || ||||||||| ||| Sbjct 707707 TTTTGCCAGTCAAAGTCTTGACGAAGATTTGCATCCCGC 707745 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| | |||| ||| || ||||| ||||| || |||||| | ||| | || Sbjct 707756 CAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTC 707815 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || || || || || ||| | |||||||| ||||| |||||||| || ||||| || || Sbjct 707816 TTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTC 707875 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||| || || |||| || | || | ||||||||||||||| ||||| | || | | Sbjct 707876 TTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCAACTTCCAACGTGATGG 707934 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 ||||||| || | ||| || || || ||||||||| ||| Sbjct 707935 TTTTGCCAGTCAAAGTCTTGACGAAGATTTGCATCCCGC 707973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003081349160