Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq17 113 3e-20 seq16 96.9 2e-15 seq12 93.3 3e-14 >seq17 Length=937610 Score = 113 bits (124), Expect = 3e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| |||||||||| ||||| ||||| ||| ||||||||| || ||||| ||||| Sbjct 351324 GCCGCCGCGCAAACGCAAGACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCGGC 351383 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| || |||||||| ||| | || || || ||||||||||||| || Sbjct 351384 TAAAGTTCGGCCATCTTCTAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGCGG 351443 Query 39612 TACGCCTTCTTTGTC 39626 | ||| |||||||| Sbjct 351444 GATGCCCTCTTTGTC 351458 >seq16 Length=955652 Score = 96.9 bits (106), Expect = 2e-15 Identities = 166/238 (70%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 39487 TCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAA 39546 || ||||||||||| ||||||| ||||| ||||| || || || || || || ||| Sbjct 707280 TCTTCGCCGCCTCGTAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAA 707339 Query 39547 TCGGCCAAAACGCGTT----CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTG 39602 |||||||| |||| | || || || || || ||| | ||||| || |||||||| Sbjct 707340 TCGGCCAA----CGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTG 707395 Query 39603 ATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTG 39661 ||||| || | ||||| ||||| || || || | ||| | | | ||||| | Sbjct 707396 ATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCGG 707454 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| || || ||||| || || ||||| || |||||||| ||||| Sbjct 707455 AAGACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707512 >seq12 Length=1122692 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 |||||||||||||||||| ||||| ||||| || ||||||||| || || ||||| | Sbjct 916940 CGCCGCCTCGCAAACGCAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCG 916999 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | | | | | || || || ||||| ||| | ||||| || |||||||| |||| | Sbjct 917000 CGAGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCG 917059 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCC 39669 | | ||| || ||||| ||||| ||| | ||| | | | ||||| | | || Sbjct 917060 GAATGCCCTCCTTGTCTTGAATTTTCGCTTTCA-CGTTGTCGATCGTGTCCGAGGACTCG 917118 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTT 39704 || || | || || ||||| || || |||||||| Sbjct 917119 ACTTCGAGCGTGATGGTTTTCCCAGTCAAAGTTTT 917153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369511095093