Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12 131 2e-25 seq16 125 7e-24 seq17 104 2e-17 seq7 91.5 1e-13 >seq12 Length=1122692 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38259 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AAC 38317 ||||| | || || ||||||||||| |||| |||||| || | |||| | | ||| Sbjct 917153 AAAACTTTGACTGGGAAAACCATCACGCTCGAAGTCGAGTCCTCGGACACGATCGACAAC 917094 Query 38318 GCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTA 38377 | | |||| ||||| | ||||| ||||| ||||| | ||||| ||||| | |||| Sbjct 917093 G-TGAAAGCGAAAATTCAAGACAAGGAGGGCATTCCGCCGGACCAGCAGCGATTGATTTT 917035 Query 38378 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGC 38437 ||| || |||||| | || |||| | | || ||| || |||||||||||||| ||| | Sbjct 917034 CGCCGGTAAACAGTTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAATC 916975 Query 38438 GACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || |||| |||||| |||||||| |||||||| Sbjct 916974 AACCTTGCACTTGGTGTTGCGTTTGCGAGGCGGC 916941 >seq16 Length=955652 Score = 125 bits (138), Expect = 7e-24 Identities = 371/561 (66%), Gaps = 21/561 (4%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || || ||||| ||||| || ||||| | || | |||||| || ||||| Sbjct 698030 GCAGGCGAAATCGCAGTGCAACCCTTCGTCTCGACTGATCAACTCGTTGGAAAACGTCAA 697971 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||| | || | || || |||||||| |||||| ||||||||| ||||| Sbjct 697970 ACCTTTCATCAATCCTCTCTTCTTTAGCCAAAAGATGGCGCAGAAACTGCCGCTGAAGAA 697911 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT-CTTTG-CTG 133071 | ||| || ||| |||||| | || | || ||| | ||| | || | | || Sbjct 697910 AATGCCTTCCACGCATGCGAAACCGACTAAACGTTCGGCAAACCTCGCCGACGAAGACT- 697852 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 ||||||| || |||||| || ||||| | ||| ||| || ||||| | || || Sbjct 697851 -CGATCCATTTCATCGCCCAATCCGCCTTCTTTTTCACGGTTGGAATCGTATGAATCGCT 697793 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGA---GGAACG--CACGTAGGTGTCGATGAGGGTCG 133186 |||||| ||||||||| || || | |||||| || || | | || Sbjct 697792 CGAAACAAA-----TTTCTCTTCTGAATTGGGTCTTTCACGTACGTCTCTAACAACAACG 697738 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATT--TGAAAGCCGTAAAAGCACCGCGC 133244 ||| |||| ||| | ||||| |||| ||| ||||| ||||||| | ||| Sbjct 697737 CGTACGTTTCGCTGTGAATATTCTCGATGG--ATTGCTGAAACGCGTAAAACGCTCTCGC 697680 Query 133245 CTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTC 133304 |||| ||||| | |||| || ||| || | ||| || |||||| ||||| Sbjct 697679 CTCGGGAACCTGAATCTCTTTCATAAACCGCACGCATAAATTCTCCAAGACGATACCGTC 697620 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA-GC 133363 |||||||||||| |||| |||||| |||| ||||| ||||||| |||||||| | Sbjct 697619 CGAGGCGGCGAAAAACGCCAAAACGTGCGTGATAAAATGTTGCTCGTTCTCGTTCAACGT 697560 Query 133364 GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 | | ||| || | || | | || || | |||||| |||||||||| ||||| Sbjct 697559 GAT-CCAATCTCTGTAATCGTACGTCAAATCAATCTCCTCCGCGGTCCAAAAGCTCGCCT 697501 Query 133424 CGGCTTTTTTGTACATACTCC 133444 | ||||| || || ||||||| Sbjct 697500 CCGCTTTCTTATA-ATACTCC 697481 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||||||||| | || |||||| | || Sbjct 707740 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCC 707681 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | | |||| | || | || |||| ||||| || || || ||||||| | | Sbjct 707680 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGTAT-CCCGCCGGATC 707623 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | |||| ||| || || ||| | || |||| | || | ||| |||| Sbjct 707622 AGCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACA 707563 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | ||| |||| |||||| |||||||||||||||| Sbjct 707562 ACATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTGAGAGGCGG 707514 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||||||||| | || || ||| | || Sbjct 707968 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTTGAGTCTTCC 707909 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | | |||| | || | || |||| ||||| || || || ||||||| | | Sbjct 707908 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGTAT-CCCGCCGGATC 707851 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | |||| ||| || || ||| | || |||| | || | ||| |||| Sbjct 707850 AGCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACA 707791 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | ||| |||| |||||| |||||||||||||||| Sbjct 707790 ACATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTGAGAGGCGG 707742 Score = 116 bits (128), Expect = 4e-21 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||||||||| | || |||||| | || Sbjct 707512 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCC 707453 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | | |||| | || | || |||| ||||| || || || ||||||| | | Sbjct 707452 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGTAT-CCCGCCGGATC 707395 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | |||| ||| || || ||| | || |||| | || | ||| |||| Sbjct 707394 AGCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACA 707335 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | ||| |||| |||||| ||||||| |||||||| Sbjct 707334 ACATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTACGAGGCGGC 707285 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 |||||||| | || || ||||| | |||| ||| || || ||| | || |||| | Sbjct 708094 GGAATTCCGCCGGATCAGCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGA 708035 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || | ||| ||||||||||| ||||| | ||| |||| |||||| ||||||||||| Sbjct 708034 ACGTTGGCCGATTACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTGAGA 707975 Query 38466 GGCGG 38470 ||||| Sbjct 707974 GGCGG 707970 >seq17 Length=937610 Score = 104 bits (114), Expect = 2e-17 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314 ||| || |||||||||||| || |||||| |||| |||||| | | |||| | | Sbjct 351539 GTATAACAGCTCACGGGCAAGACGATCACCCTCGAAGTCGAGTCTTCGGACACTATCGAC 351480 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCA 38373 |||| | || | ||||||| ||||||||||| | ||||||| || || ||||| | | Sbjct 351479 AACG-TCAAGGCGAAAATCCAAGACAAAGAGGGCA-TCCCGCCGGATCAGCAGCGATTGA 351422 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | ||| || ||||| | || || | || || | |||||| ||||| ||||| | Sbjct 351421 TCTTCGCCGGAAAACAATTAGAAGATGGCCGAACTTTAGCCGACTATAACATTCAAAAAG 351362 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || | || |||| ||||| |||||||| | |||||| Sbjct 351361 AATCCACCTTGCACTTGGTCTTGCGTTTGCGCGGCGGC 351324 >seq7 Length=519835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGA 38326 ||||||||||| |||||| | || || || || | |||| | | | |||| | || | Sbjct 260561 ACGGGCAAAACGATCACCTTGGAAGTGGAATCCTCGGACACCATCGACAACG-TCAAGGC 260503 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 ||||||| ||||| || || || || | ||||| |||||| | || | ||| || || Sbjct 260502 GAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCGGTTGATCTTCGCCGGGAA 260443 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||| | || |||| ||||| | || || ||||| ||||| || | ||| | || Sbjct 260442 ACAGTTAGAAGACGGACGCACTTTGGCGGATTATAACATTCAAAAAGAGTCCACGTTACA 260383 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| | || |||||||||| Sbjct 260382 CTTGGTGTTACGCCTGAGAGGCGG 260359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172668704640