Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 176 6e-39 seq13 136 5e-27 seq14 107 2e-18 seq12 89.7 6e-13 >seq1 Length=1352724 Score = 176 bits (194), Expect = 6e-39 Identities = 559/862 (65%), Gaps = 21/862 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||||| ||| | || | ||||||||||| | | ||||| || | Sbjct 26390 CCCGCAGCACATGTTGATGAGAGTATCCATCGGTATCCACAAGAAGGATATCGAAAAGGC 26331 Query 111671 TTTGGAGACATACGACAAGATGTCC---CGTGGTATGTTCATCCACGCAACACCAACCCT 111727 | | || || || ||| | |||| ||| | ||| | |||||| | |||||| | Sbjct 26330 TGTTGATACGTATCACATGTTGTCTGAACGTTGGATG---ACCCACGCGTCGCCAACCTT 26274 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 |||||||| ||||| || |||| ||| | ||| || || | ||| | ||||| Sbjct 26273 GTTCAACGCCGGTACGCCGCGACCGCAACTCTCCTCGTGCTTTTTGATTTGCATGAAGGA 26214 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || || || | || || |||| ||| | | ||||| || || || |||| || Sbjct 26213 AGACTCCATTGAAGGTATCTACGACACGTTGAAGGAATGCGCGTGCATTTCCAAGTCCGC 26154 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 || ||||| || || || || || || | |||| ||| |||||||| || Sbjct 26153 CGGCGGTATTGGTTTGTCTATTCACGACATCCGCGCCACTTCGTCGTACATTAGAGGCAC 26094 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 ||| ||| || | ||||| ||||| ||||||||||| || |||| ||| ||| | || Sbjct 26093 AAACGGTACCTCGAACGGTATCATTCCGATGCTTCGCGTGTTCAACGACACGGCGAGGTA 26034 Query 111968 TGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || |||||| || || |||||||| || | || | || || || || ||||| Sbjct 26033 CGTGGACCAAGGCGGCGGTAAGCGCAAGGGCGCTTTTGCCATTTACCTCGAACCGTGGCA 25974 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 | | || ||| | || | || || ||||| ||||| || | || || ||| | Sbjct 25973 CTCTGACATCTTCGACTGGCTCGACTTGCGAAAGAACCACGGGAAGGAAGAAGCGAGAGC 25914 Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || || | || | || | | |||| ||| | |||||||| ||||| || || | Sbjct 25913 TCGTGACTTGTTTTACGGTTTGTGGACGAACGATTTGTTCATGAAAAGAGTCGAAGAAAA 25854 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG-ATGCCGTGGGTG 112203 ||||| ||| | | | || || || || || ||| | |||| |||| | ||||| Sbjct 25853 CGGCAAGTGGACGTTAATGTGCCCGAACGAGTGCCCGGGTTTGTCCGAATGCTG-GGGTG 25795 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT-- 112261 | ||||||||||| | ||||| |||||||| |||||| || | |||| | Sbjct 25794 AAGAGTTTGAAGCTTTGTACACCAAGTACGAAAAAGAAAACAAGGGTAAGAAGACGATCA 25735 Query 112262 ---GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 ||||| || | ||| || ||||| | | ||| || ||||||| || Sbjct 25734 ACGCCCAGCAGC-----TTTGGTTTGCGATTCTTGAAGCGCAAGTGGAAACTGGTAACCC 25680 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 || ||| | | ||| || || || |||| ||| || ||| | |||||||| ||| Sbjct 25679 GTACATGTTGTTCAAGGATGCGTGCAACCGCAAGTCGAACCAACAAAATTTGGGCACGAT 25620 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 ||| |||||| | || ||||| ||| | ||||| || || || || || || Sbjct 25619 CAAATCGTCCAACTTGTGCACAGAGATCGTCGAATTCACCTCGCCGGAAGAAACTGCCGT 25560 Query 112439 GTGTAACCTCGCATCAATCGCT 112460 |||||| | || || |||||| Sbjct 25559 TTGTAACTTGGCCTCCATCGCT 25538 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 112891 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 112950 |||| ||| || ||| | ||||| |||||||| || || ||| | ||||| ||||||| Sbjct 25035 TTCGCAACTCCCTCTTGGTTGCACCGATGCCAACCGCGTCAACCTCCCAAATTTTGGGTA 24976 Query 112951 ATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA 112997 | || || ||||||||||| || || ||||||| ||| ||||||| Sbjct 24975 ACAACGAGTGCTTTGAACCGTATACATCGAACATTTATGCGAGAAGA 24929 >seq13 Length=1091008 Score = 136 bits (150), Expect = 5e-27 Identities = 303/450 (67%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 185278 TGAAGATAGAACGGTTCAAGCCATCCACGATAATGCCGAACAATTTGACGCAAGGACTGA 185337 ||||||| || ||| || ||||||| || |||||| || |||| || ||| || Sbjct 303240 TGAAGATGAAATTGTTGCCGCGATCCACGCCAACGCCGAAGTCTTCGACGAAAAGACCGA 303181 Query 185338 ATACTCTATGCGATATCTACAAATCTTGACTGCGTGTTGTGATTCTTTTGCACACGGTGC 185397 || | || || | ||| | || ||||| || | ||| | || | ||||| || Sbjct 303180 ATTGGCGTTGAGACCGTTGCAAGTTTTAACTGCTTGCTTAGATGCCTTCTCCCACGGCGC 303121 Query 185398 AAATGATGTCGCCAATTCAATCGGTCCATTTGCCGCTATTTATGCCATCTACAAATCAGG 185457 ||||| || ||||| || ||||||| || |||||||| |||| |||||| | || Sbjct 303120 GAATGACGTTGCCAACTCTGTCGGTCCGTTCGCCGCTATCGTCACCATTTACAAAGCTGG 303061 Query 185458 TAAAGTCAGTAAGAA--TGCCGACATGGGTAATGACGCATATTGGATTCTCTCACTCGGT 185515 | || | ||||| |||||| |||| |||| | || ||||| | || | ||| Sbjct 303060 TGGCGTGAAGAAGAAGATGCCGA--TGGGCGATGATTCCTACTGGATCTTGTCTTTGGGT 303003 Query 185516 GCCACCGGTATCGTTGCGGGTCTCTCCCTCTACGGTTACAAGATTCTAAACGCCCTTGGC 185575 || ||||||||| ||| | || | |||||||||||||| | ||||| | ||| Sbjct 303002 GCGTTCGGTATCGTGATTGGTTTGGCCTTGTACGGTTACAAGATCTTGCACGCCTTGGGC 302943 Query 185576 -ACTAAAATGGCAAAACTTACACCGAGTCGTGGTATTTGTATTGAACTTGGTGCAGCCGC 185634 | | | | |||||| | || ||| | |||||||| || || || || || ||| Sbjct 302942 GGCAAGATTTGCAAAA-TGACCCCGTCCAGAGGTATTTGCATCGAGCTCGGCGCCGCCAT 302884 Query 185635 TGTGATCATTTTGGGATCACGATTAGGTTGGCCTCTCTCTACGACACATTGCCAAGTTGG 185694 || || || |||| || || | || ||||| | || ||||| || |||||||| || Sbjct 302883 GGTTATTATCATGGGTTCTCGTCTCGGCTGGCCGTTGTCCACGACTCACTGCCAAGTCGG 302824 Query 185695 TGCAACCGTTGGTGTTGCTCTCTTTGAAGG 185724 ||| || || || || || ||| ||||| Sbjct 302823 TGCCACTGTCGGCGTCGCCTGCTTGGAAGG 302794 Score = 104 bits (114), Expect = 3e-17 Identities = 300/459 (65%), Gaps = 2/459 (0%) Strand=Plus/Minus Query 184553 GCATTTGGAATAGGTGCAAATGATGTTGCCAATGCATTCGCAACATCAGTTGGATCAGGT 184612 || ||||| || || || || ||||| || || || ||||| || || || || || || Sbjct 304142 GCGTTTGGCATCGGCGCGAACGATGTCGCGAACGCGTTCGCGACCTCGGTCGGCTCCGGC 304083 Query 184613 GCTTTGAAAGTTAAGCACGCAGTGCCACTCGCGGCTGTGTGTGAGTTTTCGGGGTCTCTG 184672 || || ||||| || | ||||| || ||||| || || |||| | | Sbjct 304082 GCGGTGTCGATTAAGTTGGCGATTATGCTCGCCGCCGTGTGCGAATTCACGGGTGCCTTA 304023 Query 184673 TTTATGGGAAGTCATGTCGTAAAAACAATACGAAAAGGAATCAGCGATCAAGAATGTTTT 184732 |||||||| ||| || | |||| || ||||| ||| ||| | |||| ||| Sbjct 304022 TTTATGGGTTCTCACGTGACCGAGGCAATCCGTAAAGGGATCGCGGATTACAAATGCTTT 303963 Query 184733 GTTGACGACCCCGGACTTCTCATGTATGGATGTTTATGTGTTATACTGTCAGTCGC-TAT 184791 |||| || | | || | ||||| || || || || || | | | || ||| Sbjct 303962 ACCAACGATCCGGCAATTATGATGTACGGGTGCTTGTGCGTGTTGGCCGC-GACGAGTAT 303904 Query 184792 ATGGTTAATTGTTGCGTCTTATTTTGAAATGCCTGTATCTACAACACATTCATGTGTCGG 184851 ||||| || | ||||| ||||| || ||||| || || || || || || || ||||| Sbjct 303903 TTGGTTGATGTTGGCGTCGTATTTGGAGATGCCGGTCTCGACGACGCACTCTTGCGTCGG 303844 Query 184852 TGGCATGATTGGAATGACGATGGTTGCGAGAGGATCTAATTGTGTTACATGGATTGCAAA 184911 ||||||||||| ||||| |||| | ||||| || || || | ||| ||| Sbjct 303843 CGGCATGATTGGCATGACTTTGGTCACCAGAGGTCAAAAGTGCGTCATCTGGTCAAAAAA 303784 Query 184912 ATCCAACCAATTCCCATATGTCAAGGGTGTCGTTGCCATTATCGTTTCATGGTTACTCTC 184971 | || |||| || || || || ||||| | || ||| || || ||||| ||||| Sbjct 303783 AGTTGACGAATTTCCGTACGTTAAAGGTGTTGCCGCGATTGTCTGCTCGTGGTTGCTCTC 303724 Query 184972 GCCGATTATTTCGGGACTTTTTGCTTCTTCATTATTTTT 185010 |||||| |||| || ||| || | | | || ||||| Sbjct 303723 TCCGATTGTTTCCGGCGCTTTCGCGTTTGCCTTGTTTTT 303685 >seq14 Length=1037991 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || || || | |||| || || || || || || ||||||||||| || || Sbjct 66347 TCCTTCGCCGAACGTTTGGTCGCGTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCTCT 66288 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||| | || || |||||||||||| |||| | ||||| || ||| |||||||||| Sbjct 66287 TTCTGCTCAATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTCACCTTCTCCAAC 66228 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||| | ||||| | ||||| || | ||| ||| |||||| Sbjct 66227 GAGTTGATCTCCAGAGACGAAGGTTTGCACAGAGATTTTGCG 66186 >seq12 Length=1122692 Score = 89.7 bits (98), Expect = 6e-13 Identities = 179/260 (69%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 176038 ACGCGTACCAAACTGACCACACGGCTC-AAGAAGATTGATATTGTTTGAACCCATGTAGT 176096 |||||||||||||||||| | ||| | || ||| ||||| ||||| | || | | | | Sbjct 1064175 ACGCGTACCAAACTGACCGCTCGGGACTAACAAG-TTGATGTTGTTCGTCCCAACGAAAT 1064233 Query 176097 CATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCT 176156 | | || | || || || || ||| ||||| |||| |||||||| || || | Sbjct 1064234 CTTGAGCGAGATTAACGATTGTCGACGCAAGAGACGCTTCGCCGTGGTGATAGGCGGAGT 1064293 Query 176157 TCTCTGCGACAAATGCCGC-CAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGG 176215 || | ||| | |||| ||| ||||| ||||| || || ||| | || | | | Sbjct 1064294 GTTCCGAGACGTAA-CCGCTCAATTGCGCGACTTTGATGTCCGACTTCAACTTTCTCTTG 1064352 Query 176216 AAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGCGATA 176275 || || | ||||||| || |||||||||||||||| |||||| | || ||| Sbjct 1064353 AAGCACGAAAACATAACTTTTCGTTGCGAAGGCTTGAAACCATCAATGGCGGATGGAATA 1064412 Query 176276 GAACGCTTCAAGTCCGCCAA 176295 |||||| | || |||||||| Sbjct 1064413 GAACGCATTAAATCCGCCAA 1064432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742237055120