Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 167 2e-35 >seq6 Length=663424 Score = 167 bits (184), Expect = 2e-35 Identities = 398/596 (67%), Gaps = 20/596 (3%) Strand=Plus/Minus Query 552115 ATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTT 552174 |||||||||| | |||||||| || |||||||| || ||| ||| ||| |||| | Sbjct 465991 ATGAAATTGTTTTAGTTGGTGGCTCGACAAGAATCCCCAAAGTTCAGGAACTGTTGAAAG 465932 Query 552175 CTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATG 552234 || || |||| || || | | | || || |||||||| |||||||| |||| Sbjct 465931 AGTACTTTGATGGCAAGGAACCGAGCAAGGGAGTGAACCCAGATGAAGCTGTTGCATATG 465872 Query 552235 GTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC---TGATGAAA--AACTACAAAA 552289 |||| ||| | |||| | ||| | ||||| || |||||||| || ||| | Sbjct 465871 GTGCTGCAGTCCAAGGCGGGATTTTATCTGGCGAAGGGGGTGATGAAACGAAGGACATAC 465812 Query 552290 TATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTAT 552349 | | | |||| |||| | ||||| | | ||| | ||||||||||| || |||| Sbjct 465811 T--TCTCCTTG---ATGTAGCACCTCTGACACAAGGTATTGAAACAGTTGGTGGCGTTAT 465757 Query 552350 GACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTAC 552409 ||| || | ||| | |||||| || || |||||||||| ||| | || Sbjct 465756 GACGAAGTTGATCCCACGTAATACTGTCATACCGACAAAAAAATCTCAAACTTTTACAAC 465697 Query 552410 GTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCAC 552469 ||| ||||||||| |||| | || || ||||||| || |||||| | || Sbjct 465696 ATATCAAGATAATCAGCAAACTGTGATGATACAGGTTTTTGAGGGTGAAAGAGCCATGAC 465637 Query 552470 TAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT--ATTCCTCCTGCTCCTCGT 552527 || |||||| || |||||||| ||| | | | || ||||| ||||| || | Sbjct 465636 CAAGGATAATCATTTACTTGGTAAATTTGAACT--CACGTCAATTCCCCCTGCACCCAGG 465579 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || || ||||| || ||||| || || || ||||| ||||| ||| | ||||| | Sbjct 465578 GGTGTTCCACAAATCGAGGTTACGTTTGAAATTGATGCGAATGGGATTCTTAATGTCGGT 465519 Query 552588 GCTTGTGATAA---ATCTAGCAACAAGAGTAAAAATATTACTNNNNNNNATAATCGTGGT 552644 || ||||| | || | || | || | || |||||| | || || Sbjct 465518 GCGGAAGATAAAGGAACTGGTAA-ATCAG--AGAAAATTACTATAACAAACGATAAAGGG 465462 Query 552645 AGATTTACTGATGAACAAATTAAACGTATGGTCGAAGAAGCTAAAGAATTTGAAGA 552700 ||| || || | ||| ||||| |||||||||||||||||||| ||||||||| ||| Sbjct 465461 AGACTTTCTCAAGAAGAAATTGAACGTATGGTCGAAGAAGCTGAAGAATTTGCAGA 465406 Score = 129 bits (142), Expect = 5e-24 Identities = 326/489 (67%), Gaps = 19/489 (4%) Strand=Plus/Plus Query 368561 ATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTC 368620 |||| ||||| ||||| | |||||||| || || | | || ||||||||||||| Sbjct 433851 ATAACTGGCTTGAAAATGTACATGATTGGTCGATCTCTCGGAACAGATTTTGGGGAACTC 433910 Query 368621 CAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAG 368680 | ||||| ||||||| || |||||||||||||||| | || ||||| || ||| Sbjct 433911 CTATTCCTGTATGGACTTCACCTGATGGTGAAGAAATTCGTGTAATTGGTTCTGTTGAAG 433970 Query 368681 AATTGCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACATATTGATAAAATTGATC 368740 || | | || ||||||| | || | |||||| | || | | || |||| Sbjct 433971 AACTCGAGCGCTTGTCTGGTGAGAAAG---TGAGTGATCTTCACAGACACTTCATCGATC 434027 Query 368741 ACATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTG------TC-TCGAGTTGAAGGA 368793 | | ||||||| || | ||| | | | || || | |||| || | Sbjct 434028 ATTTGGAAATTCCCTCTTCGCGAGGTACTGACT-ATCCAAGCCTTCGTAGAGTAGAGGAC 434086 Query 368794 GTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTT 368853 ||||| |||||||||||||| || |||||||||| ||| ||||||||||||| Sbjct 434087 GTTTTTGATTGCTGGTTTGAGAGTGGAAGCATGCCTTATGCTCAGCAACATTATCCATTT 434146 Query 368854 GATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCA 368913 || ||| |||| ||||| | || | | |||||| ||||| | ||| Sbjct 434147 GAGAACAATCAATATTTTGAGAC-GA-----ACTTCCCGGCTGACTTTGTTGCTGAAGGC 434200 Query 368914 ATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGAT 368973 ||||||| ||||| |||||||| || || | | ||| | || || ||| |||| ||| Sbjct 434201 CTTGATCAGACACGCGGTTGGTTCTACACATTGATGGTACTTTCAACTGCTCTTTTTGAT 434260 Query 368974 AAACCGGCTTTTAAAAATGTAATA-GTAACTGGTATTGTTAATGCATCTGATGGTCAAAA 369032 || || || |||||| | || |||| |||| |||| ||||||||||| |||| Sbjct 434261 CGCCCAGCATTCAAAAATCTTATTTGTAA-TGGTCTTGTCTTAGCATCTGATGGAAAAAA 434319 Query 369033 GATGTCAAA 369041 ||||| || Sbjct 434320 AATGTCTAA 434328 Score = 125 bits (138), Expect = 6e-23 Identities = 264/396 (67%), Gaps = 12/396 (3%) Strand=Plus/Minus Query 552204 AGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCT 552263 ||||| |||||||| || | |||||||| || || ||| |||||| | | || || Sbjct 519370 AGTGTGAATCCAGACGAAGTTGTTGCCTTAGGGGCTGCAGTTCAAGGTGGCGTGCTCGCT 519311 Query 552264 GGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 || || | ||| | | || ||| | || || ||||| || || ||| Sbjct 519310 GGTGAAGTTTCTGACATA------------GTTCTTCTTGACGTCACTCCGCTTTCACTT 519263 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 || | |||||| |||| ||| ||||||| || || || | |||| || || | ||| Sbjct 519262 GGACTTGAAACACTTGGGGGTGTTATGACGAAGCTCATTCCTCGAAACACAACATTACCT 519203 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 | |||||| || || || || | | ||| ||||| ||| |||| | Sbjct 519202 ACTTCGAAATCTGAAGTTTTCTCCACCGCTGCTGATGGCCAAACCAGTGTAGAAATTAAC 519143 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503 |||| |||| |||||| | || ||||||||||| ||||| | ||| ||| Sbjct 519142 GTTTTGCAAGGTGAAAGAGAGTTTGTGAAAGATAATAAAAGTCTTGGCAACTTTCGTTTG 519083 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 || || || || | ||||| |||||||| ||||| |||||||| | |||||||| ||| Sbjct 519082 GATGGAATACCATCCGCTCCCCGTGGAGTTCCGCAGATTGAAGTCAAGTTCGATATAGAT 519023 Query 552564 GCCAATGGAATTTTGAATGTGACTGCTTGTGATAAA 552599 || ||||||||| | ||| |||||||||||| Sbjct 519022 GCGAATGGAATTCTTTCTGTCGAAGCTTGTGATAAA 518987 Score = 118 bits (130), Expect = 9e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 550043 AATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTT 550102 || || ||||||||||| ||||| ||||| ||||| || || | |||||||||||| ||| Sbjct 467087 AACGGGAAAGTTGAAATAATTGCAAATGACCAAGGCAATAGGATTACTCCATCTTACGTT 467028 Query 550103 TCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAAT 550162 | || ||||| ||||| | | | | || ||||| |||||| |||||||||| ||| Sbjct 467027 GCATTTACGGATACTGAGCGTCTGATCGGAGATGCTGCAAAAAATCAAGCCACCTCCAAT 466968 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAA 550205 || || || ||||||| |||||| | || ||||| |||| Sbjct 466967 CCAACACGAACCGTTTTTGACGCTAAAAGATTGATTGGGAGAA 466925 Score = 93.3 bits (102), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || ||||| || || || | ||||| || |||||||| Sbjct 520033 GCTGTGATTACAGTTCCTGCGTATTTCAACGATAGTCAGAGACAAGCCACAAAAGATGCC 519974 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | |||||||| || ||||| | ||||| ||||||||||| ||||||||| | ||| Sbjct 519973 GGGCAGATTGCTGGTATTGATGTTTTGCGTATCATCAATGAACCGACTGCTGCTTCGCTT 519914 Query 550520 GCATATGGACTTGA 550533 |||||||| |||| Sbjct 519913 GCATATGGTTTTGA 519900 Score = 91.5 bits (100), Expect = 1e-12 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 550417 AGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACT 550476 ||||||||| ||||| |||| |||||||| || |||||||| || || || ||||| Sbjct 466595 AGCATATTTCAATGATGCACAGCGTCAAGCAACAAAAGATGCGGGGACAATCGCGGGACT 466536 Query 550477 TAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||| | |||||||||||||||||||| || || | || ||||| ||||| || Sbjct 466535 CAACGTTGCAAGAATTATCAATGAACCTACTGCGGCGGCCATCGCCTATGGTCTTGACAA 466476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294889425290