Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 212 4e-49 seq17 86.0 4e-11 >seq6 Length=663424 Score = 212 bits (234), Expect = 4e-49 Identities = 411/599 (69%), Gaps = 12/599 (2%) Strand=Plus/Minus Query 475691 CAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATG 475750 ||| || ||||||||||| | || || || || |||||||| || ||| | ||| || Sbjct 465998 CAAATCGATGAAATTGTTTTAGTTGGTGGCTCGACAAGAATCCCCAAAGTTCAGGAACTG 465939 Query 475751 CTTTCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTT 475810 | | || ||| |||| || | | | | || || || |||||||||||| Sbjct 465938 TTGAAAGAGTACTTTGATGGCAAGGAACCGAGCAAGGGAGTGAACCCAGATGAAGCTGTT 465879 Query 475811 GCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGA-GAAACTAAA 475869 |||||||| ||||| ||||||| | |||||||| || || | || ||||| || Sbjct 465878 GCATATGGTGCTGCAGTCCAAGGCGGGATTTTATCTGGCGAAGGGGGTGATGAAACGAAG 465819 Query 475870 TAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGAT 475929 | || | || |||| ||| | || || || |||| ||||||||||||| || | Sbjct 465818 GAC-ATACTTCTCCTTGATGTAGCACCTCTGACACAAGGTATTGAAACAGTTGGTGGCGT 465760 Query 475930 TATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTC 475989 |||||| || | || | |||||| || || |||||||| || ||| | Sbjct 465759 TATGACGAAGTTGATCCCACGTAATACTGTCATACCGACAAAAAAATCTCAAACTTTTAC 465700 Query 475990 CACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATT 476049 || ||| |||||||| |||||| | || || | ||||| ||||||||| | Sbjct 465699 AACATATCAAGATAATCAGCAAACTGTGATGATACAGGTTTTTGAGGGTGAAAGAGCCAT 465640 Query 476050 CACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT--ATTCCTCCTGCTCCC 476107 || || |||||| | |||||| | ||| | || | || ||||| ||||| ||| Sbjct 465639 GACCAAGGATAATCATTTACTTGGTAAATTTGAACTC--ACGTCAATTCCCCCTGCACCC 465582 Query 476108 AGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTT 476167 || || ||||| ||||| || ||||| ||||| |||||||| ||||| ||||||||||| Sbjct 465581 AGGGGTGTTCCACAAATCGAGGTTACGTTTGAAATTGATGCGAATGGGATTCTTAATGTC 465522 Query 476168 ACTGCTTGTGATAA---ATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAATCGT 476224 ||| ||||| | || |||| | || | || || ||||| |||||| || Sbjct 465521 GGTGCGGAAGATAAAGGAACTGGTAA-ATCAG--AGAAAATTACTATAACAAACGATAAA 465465 Query 476225 GGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAAGA 476283 || ||| || || ||||| ||||| |||||||||| || ||||| |||| |||| ||| Sbjct 465464 GGGAGACTTTCTCAAGAAGAAATTGAACGTATGGTCGAAGAAGCTGAAGAATTTGCAGA 465406 Score = 134 bits (148), Expect = 9e-26 Identities = 215/309 (70%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 475874 ATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATG 475933 || || ||| ||||||| ||||| |||||| | || ||||||||| |||| || ||||| Sbjct 519295 ATAGTTCTTCTTGACGTCACTCCGCTTTCACTTGGACTTGAAACACTTGGGGGTGTTATG 519236 Query 475934 ACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACT 475993 || || || ||| |||| || | | || ||||| |||| || ||||| Sbjct 519235 ACGAAGCTCATTCCTCGAAACACAACATTACCTACTTCGAAATCTGAAGTTTTCTCCACC 519176 Query 475994 TATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACT 476053 | ||||| ||||| | |||| || | | || ||||||||||| | || Sbjct 519175 GCTGCTGATGGCCAAACCAGTGTAGAAATTAACGTTTTGCAAGGTGAAAGAGAGTTTGTG 519116 Query 476054 AAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113 ||||||||||| | ||||| | ||| | | || || || || | |||||| | ||| Sbjct 519115 AAAGATAATAAAAGTCTTGGCAACTTTCGTTTGGATGGAATACCATCCGCTCCCCGTGGA 519056 Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| || |||||||| | || ||||| ||||| ||||| |||||| ||| ||| Sbjct 519055 GTTCCGCAGATTGAAGTCAAGTTCGATATAGATGCGAATGGAATTCTTTCTGTCGAAGCT 518996 Query 476174 TGTGATAAA 476182 ||||||||| Sbjct 518995 TGTGATAAA 518987 Score = 129 bits (142), Expect = 4e-24 Identities = 126/162 (78%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 474380 AATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTT 474439 || || ||||| ||||||||||| ||||||||||| ||||| | || ||||| || ||| Sbjct 467087 AACGGGAAAGTTGAAATAATTGCAAATGACCAAGGCAATAGGATTACTCCATCTTACGTT 467028 Query 474440 TCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAAT 474499 | ||||| || ||||| | ||| || ||||||||||| ||| ||||||| | || ||| Sbjct 467027 GCATTTACGGATACTGAGCGTCTGATCGGAGATGCTGCAAAAAATCAAGCCACCTCCAAT 466968 Query 474500 CCTGTTAATACTA----TTTTTGATGCTAAAAGATTGATTGG 474537 || || || | ||||||| ||||||||||||||||| Sbjct 466967 CC----AACACGAACCGTTTTTGACGCTAAAAGATTGATTGG 466930 Score = 105 bits (116), Expect = 4e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 474754 AGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCT 474813 ||||||||| |||||| | || ||||||||||| ||||||||||| | ||| || || || Sbjct 466595 AGCATATTTCAATGATGCACAGCGTCAAGCAACAAAAGATGCGGGGACAATCGCGGGACT 466536 Query 474814 TAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 || ||| | | ||||| |||||||| || || || || | || ||||||||||| || Sbjct 466535 CAACGTTGCAAGAATTATCAATGAACCTACTGCGGCGGCCATCGCCTATGGTCTTGACAA 466476 Query 474874 GAA 474876 ||| Sbjct 466475 GAA 466473 >seq17 Length=937610 Score = 86.0 bits (94), Expect = 4e-11 Identities = 197/289 (68%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 475872 ATATTGTACTTGTTG-ACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATT 475930 ||||| | ||||||| |||| ||||| ||||| |||||| ||||||| | || || || Sbjct 631640 ATATTCT-CTTGTTGGACGTGACTCCGCTTTCCTTAGGTATTGAAACCTTGGGTGGCGTT 631582 Query 475931 ATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCC 475990 | || | || ||||||| || | || || |||||| || |||| |||||| Sbjct 631581 TTCACGCGATTGATCAACAGAAACACGACGATTCCGACCAAAAAGTCCCAAGTCTTTTCC 631522 Query 475991 ACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTC 476050 || | ||| ||||| || |||| | | || ||||||||||| || | Sbjct 631521 ACCGCCGCGGATTCCCAAACCCAAGTCGGCATCAAGGTTTTGCAAGGTGAAAGAGAAATG 631462 Query 476051 ACTAAAGATAATAACAAACTT-GGAACTTTTAATCTTGAAGG-TATTCCTCCTGCTCCCA 476108 | ||||| || || ||| || | ||| || |||| || ||||||||| || || Sbjct 631461 GCGGCGGATAACAA-AATCTTAGGCAACTTTGAT-TTGATGGGTATTCCTCCGGCCCCGC 631404 Query 476109 GAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTAT 476157 | || || || ||||||||||| || || ||||| || || || || || Sbjct 631403 GCGGTGTGCCGCAAATTGAAGTCACGTTCGATATCGACGCCAACGGCAT 631355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178299208108