Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq21 746 0.0 seq20 89.7 6e-13 >seq21 Length=72700 Score = 746 bits (826), Expect = 0.0 Identities = 765/994 (77%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 |||| || |||||| ||| |||| || || ||||| | || | || |||||| Sbjct 54075 TGGGGACGTTTTTGTTCATGGATCACTTCAACTGAGAACCGTTTATACATCGGATGGTTC 54016 Query 160927 GGCGTCCTGATGATTCCCTGC-TTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCG 160984 || || | ||||| |||| | || | | ||||| | ||| |||||| | || ||| Sbjct 54015 GGTGTATTAATGAT-CCCTACATTATTAACAGCTACT-TCTGTATTCATCGTAGCATTCA 53958 Query 160985 TTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGT 161044 | | ||||| || ||||||||||| || |||||||| || || |||| || || |||| Sbjct 53957 TCGCAGCTCCTCCAGTGGACATCGATGGTATTCGTGAGCCAGTATCTGGATCACTTATGT 53898 Query 161045 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 161104 | |||||||||||||||||||||||||| | ||| | || ||||||||||| || |||| Sbjct 53897 ACGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACATCAAACGCTATCGGACTTCACT 53838 Query 161105 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 161164 ||||||| |||||||||||||| | || || || ||||| ||||||||||| |||| || Sbjct 53837 TCTACCCAATCTGGGAAGCAGCTACACTTGATGAGTGGCTTTACAACGGTGGACCTTACC 53778 Query 161165 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAAC 161224 | || | || | |||||| | || || | | | | |||||||||||||||||||| | Sbjct 53777 AGCTTATCGTATGTCACTTCTTCATCGGAGTATGTTCATACATGGGTCGTGAGTGGGAGC 53718 Query 161225 TTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTG 161284 |||| | |||| | ||||||||||||||||| ||||| |||||||||||||| || | Sbjct 53717 TTTCATTCCGTTTAGGAATGCGTCCTTGGATCGCTGTAGCTTACTCTGCTCCTGTAGCAG 53658 Query 161285 CAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGC 161344 | || | |||||| ||| | | || || |||| || || ||||||||||| | |||| Sbjct 53657 CTGCAACTGCAGTATTCATCATTTACCCAATCGGACAGGGATCTTTCTCTGACGGTATGC 53598 Query 161345 CTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTC 161404 |||| || || ||||| || ||||||| |||| | || ||||| || ||||||||||| | Sbjct 53597 CTCTTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCC 53538 Query 161405 TCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTG 161464 | |||||||| ||||| ||||| || ||||| ||||| || || ||||| || ||| || Sbjct 53537 TTATGCACCCATTCCACATGCTTGGAGTAGCTGGTGTATTCGGTGGTTCACTTTTCTCTG 53478 Query 161465 CAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCC 161524 | ||||||||||| || || || ||||| || | |||||||| || || ||||| || Sbjct 53477 CTATGCACGGTTCACTCGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAG 53418 Query 161525 AGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACG 161584 ||| || ||||||||||| |||||||||||||| |||||||| || ||||| |||| Sbjct 53417 CTAACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTAGCTGCTCACG 53358 Query 161585 GGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACT 161644 | |||||||| ||||| || |||||||||||||| ||||||||||| || || || |||| Sbjct 53357 GTTACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACT 53298 Query 161645 TCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 161704 ||||||| ||| |||||||| | || ||||||||||| || || || | || | Sbjct 53297 TCTTCCTCGCTATCTGGCCTGTAATGGGAATCTGGTTCACAGCTCTTGGTATTTCTACTA 53238 Query 161705 TGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAG 161764 |||| |||||||| || || ||||||||||||||||| | || ||| | || | Sbjct 53237 TGGCTTTCAACCTTAACGGATTCAACTTCAACCAGTCAGTGGTAGATTCAAACGGACGTG 53178 Query 161765 TTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACG 161824 | |||||||| ||||| || || | ||||||||| ||||| |||||||| ||||||| Sbjct 53177 TGATCAACACATGGGCTGATATTGTAAACCGTGCTAACCTTGGTATGGAAGTAATGCACG 53118 Query 161825 AGCGCAATGCTCACAACTTCCCTCTTGACCTTGC 161858 |||| || |||||||||||||| |||||||| || Sbjct 53117 AGCGTAACGCTCACAACTTCCCACTTGACCTCGC 53084 Score = 612 bits (678), Expect = 2e-170 Identities = 756/1024 (74%), Gaps = 10/1024 (1%) Strand=Plus/Minus Query 162111 GGGTGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 162170 || ||||| || | | || ||||||||||| | ||||||||||| || || || ||| Sbjct 62488 GGTTGGTTCGACAACGTAGATGACTGGCTTAAGCGTGACCGTTTCGTATTCGTAGGTTGG 62429 Query 162171 TCTGGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 162229 ||||||||| || || |||||| ||| || |||| ||||| || ||||||||||| || Sbjct 62428 TCTGGACTT-TTATTATTCCCATGTGCATACTTTGCACTTGGTGGATGGCTTACTGGAAC 62370 Query 162230 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGA-GGGTGCAA 162288 || ||||| || ||||| || ||||| | || ||||| || ||||| ||||| || Sbjct 62369 AACATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAAGGGTGTAA 62310 Query 162289 ACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTC 162348 ||| || ||| | ||||| || || ||| || |||| |||| || || ||||| || | Sbjct 62309 -CTTCCTCACTTCAGCAGTATCAACGCCATCAAACGCGATGGCACACTCACTTCTTCTCC 62251 Query 162349 TATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGA 162408 | ||||| || || | ||||| ||||||| || ||||| |||||||| ||| | |||| Sbjct 62250 TTTGGGGACCAGAAGCACAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGATTATGGA 62191 Query 162409 CTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAAC 162468 | || || || || |||||||| |||| | | || || || |||||||| || |||||| Sbjct 62190 CATTCGTAGCTCTTCACGGAGCATTTGGATTAATCGGATTTATGCTTCGTCAATTTGAAA 62131 Query 162469 TGGCACGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTG 162528 | || || | |||||||| ||||| || ||||| ||||||| || ||||||| Sbjct 62130 TTGCTCGTGCAGTACAAATTCGTCCATACAACGCGATTGCATTCTCAGCACCAATTGCTG 62071 Query 162529 TATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGT 162588 | || || ||| || ||||| || || | || ||||| |||||||| ||||| | Sbjct 62070 TGTTTGTATCTGTATTCCTTATTTACCCACTTGGGCAATCAGGTTGGTTCTTTGCACCAT 62011 Query 162589 CGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGA 162648 | || || || || | ||| ||||| || | || ||| ||||||| ||||| ||||||| Sbjct 62010 CATTTGGTGTAGCTGGAATTTTCCGTTTTATTCTTTTCTTCCAAGGTTTCCACAACTGGA 61951 Query 162649 CGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTG 162708 | || || || || ||||||||||| ||||| ||| | || |||| ||| | || | || Sbjct 61950 CACTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTCGGTGCAGCACTTCTTTGTG 61891 Query 162709 CTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTT 162768 | ||||| |||| || || || || ||||| | ||||||||| || ||||||| | Sbjct 61890 CAATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAGATGGTGATGGTTCAAACACAT 61831 Query 162769 TTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCT 162828 | ||||| || | || || | ||||| || || || ||||| || || ||||| | Sbjct 61830 TCCGTGCATTCAACCCAACTCAAGCAGAAGAGACTTACTCAATGGTAACGGCTAACCGTT 61771 Query 162829 TCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGC 162888 |||||||||||||||||||| | ||||| |||||||||||| | || ||||| |||| Sbjct 61770 TCTGGTCACAGATTTTCGGTGTAGCTTTCTCAAACAAGCGTTGGCTTCACTTCTTCATGC 61711 Query 162889 TCTTTGTTCCCGTCA-TGGGTCTCTGGA--CAAGTTCTATCGGTATTATTGGACTCGCTC 162945 |||| || || || | ||||| | |||| || || ||| || ||| | || | Sbjct 61710 TCTTCGTACCTGTTACTGGGT-TATGGATGTCAGCACTTGGAGTAGTA--GGATTAGCAC 61654 Query 162946 TCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGT 163005 | || || ||||| |||||||| ||||| ||||| | ||||| |||||||| ||||||| Sbjct 61653 TTAACCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTGCTGCAGAAGATCCTGAGT 61594 Query 163006 TTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCAC 163065 | || || ||||| || |||||||||||||| || |||||| | || |||||| | ||| Sbjct 61593 TCGAAACATTCTACACGAAGAACATTCTTCTTAACGAAGGAATCCGTGCATGGATGGCAG 61534 Query 163066 CAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACG 163125 | || || |||||||| ||| |||| |||||||| ||||| | ||| | || |||| Sbjct 61533 CTCAAGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACG 61474 Query 163126 CTCT 163129 |||| Sbjct 61473 CTCT 61470 >seq20 Length=43614 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 156615 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 156673 |||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||| Sbjct 33397 TAGCTCAGTTGGATAGAGCACCAGCCTTCTAAGCTGTTGGTCACAGGTTCGAGTCCTGT 33455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547747056216360