Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq21 673 0.0 seq3 86.0 7e-12 >seq21 Length=72700 Score = 673 bits (746), Expect = 0.0 Identities = 739/980 (75%), Gaps = 2/980 (0%) Strand=Plus/Plus Query 124044 CAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCA 124103 ||||||| ||||| |||||||||||||| || || | || ||||| ||||||||||| | Sbjct 53079 CAGATGCGAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCAA 53138 Query 124104 AGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAA 124163 ||| || | ||||| || |||| ||||||| || | |||||| | ||| || | Sbjct 53139 GGTTAGCACGGTTTACAATATCAGCCCATGTGTTGATCACACGTCCGTTTGAATCTACCA 53198 Query 124164 CTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGG 124223 |||| ||||| |||||||| || || | |||||| ||||| || | ||||| | || | Sbjct 53199 CTGACTGGTTGAAGTTGAATCCGTTAAGGTTGAAAGCCATAGTAGAAATACCAAGAGCTG 53258 Query 124224 TTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGT 124283 | ||||| | | | ||||| | | || ||||||||||| || | |||||||| Sbjct 53259 TGAACCAGATTCCCATTACAGGCCAGATAGCGAGGAAGAAGTGGAGTGAACGTGAGTTGT 53318 Query 124284 TGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGT 124343 |||||||||| || |||||||||||||| || ||||||||||| || ||||| ||||||| Sbjct 53319 TGAATGAAGCGTATTGGAAGATAAGACGTCCGAAGTAACCGTGAGCAGCTACAATGTTGT 53378 Query 124344 ATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTT 124403 | || |||||||||||||||||||| || || ||| ||| || | ||| || |||| Sbjct 53379 AAGTCTCTTCTTCTTGTCCGAACTTGTATCCTGCGTTAGCTGATTCGTTCTCAGTAGTTT 53438 Query 124404 CTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGA 124463 | | ||| || ||||| || || || ||||| ||||| || ||||| | || || |||| Sbjct 53439 CACGGATAAGTGAAGAAGTTACGAGTGAACCGTGCATAGCAGAGAAAAGTGAACCACCGA 53498 Query 124464 ACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGA 124523 | | || |||||||| ||||||||| || ||||| || ||||| ||||| || |||| Sbjct 53499 ATACACCAGCTACTCCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 53558 Query 124524 AAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAAC 124583 | |||| ||| ||||||||||| || || |||||||| |||||||| |||||||| || | Sbjct 53559 ATACGATCATGAAGTTGAAAGTTCCAGAAATACCAAGAGGCATACCGTCAGAGAAAGATC 53618 Query 124584 CCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAG 124643 |||| || | |||||| | | |||||| || |||||| | ||| || || || |||| Sbjct 53619 CCTGTCCGATTGGGTAAATGATGAATACTGCAGTTGCAGCTGCTACAGGAGCAGAGTAAG 53678 Query 124644 CAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGT 124703 | ||| ||||||||||||||||||||| | | |||| || ||||||| | ||||||| Sbjct 53679 CTACAGCGATCCAAGGACGCATTCCTAAACGGAATGAAAGCTCCCACTCACGACCCATGT 53738 Query 124704 ATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACA 124763 ||| | | || || | |||||| | | | | ||| ||||| ||||| || || | Sbjct 53739 ATGAACATACTCCGATGAAGAAGTGACATACGATAAGCTGGTAAGGTCCACCGTTGTAAA 53798 Query 124764 ACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTG 124823 ||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||| Sbjct 53799 GCCACTCATCAAGTGTAGCTGCTTCCCAGATTGGGTAGAAGTGAAGTCCGATAGCGTTTG 53858 Query 124824 ATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTG 124883 ||| ||||| || |||||||||||||||||||| || || | | || || | ||||| Sbjct 53859 ATGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTACATAAGTGATCCAGATACTG 53918 Query 124884 GTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACAT 124942 | || | || || ||||| || || ||||| ||||| || ||||| |||||||| ||| Sbjct 53919 GCTCACGAATACCATCGATGTCCACTGGAGGAGCTGCGATGAATGCTACGATGAATACA- 53977 Query 124943 GCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTG 125002 | | ||||| | ||| || ||||||| ||||| ||||| || | || | | | Sbjct 53978 GAAGTAGCTGTTAATAATGTAGGGATCATTAATACACCGAACCATCCGATGTATAAACGG 54037 Query 125003 TTGTTTGTTGATGTTACCCA 125022 || | ||||| || | ||| Sbjct 54038 TTCTCAGTTGAAGTGATCCA 54057 Score = 504 bits (558), Expect = 8e-138 Identities = 746/1050 (71%), Gaps = 33/1050 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||| | || || || |||||||||| || ||||| || || Sbjct 61466 TTAAAGAGCGTTTCCACGTGGAAGTACCTCCTCAGGGAATACAAGGTTTTCATGAGGCTG 61525 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || ||||||||| | || ||||| |||||||||||||||||||| ||||| Sbjct 61526 ATCTTGAGCTGCCATCCATGCACGGATTCCTTCGTTAAGAAGAATGTTCTTCGTGTAGAA 61585 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 || |||||||| || |||||||| || | |||||||| ||||| ||||||||||| | Sbjct 61586 TGTTTCGAACTCAGGATCTTCTGCAGCACGGATCTCTTGTGATACGAAGTCGTATGCACG 61645 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCA-TGACAGGAA 123104 |||||||||||||| ||||| | || | | ||| |||| | ||||| | ||||| | Sbjct 61646 GAGGTTAAGTGCTAATCCTACTACTCCAAGTGCTGACATCCATA-ACCCAGTAACAGGTA 61704 Query 123105 CGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTG 123164 |||| | ||| | |||||| | | | ||||| || || || | ||| || ||||||| Sbjct 61705 CGAAGAGCATGAAGAAGTGAAGCCAACGCTTGTTTGAGAAAGCTACACCGAAAATCTGTG 61764 Query 123165 ACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATG 123224 ||||||| | ||| || || | ||| ||||| |||||| | || || || | ||||| Sbjct 61765 ACCAGAAACGGTTAGCCGTTACCATTGAGTAAGTCTCTTCTGCTTGAGTTGGGTTGAATG 61824 Query 123225 CTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATG 123284 | | ||| || | ||||| || ||| || |||| | | || Sbjct 61825 CACGGAATGT----GTTTGAA-----CCATCACCAT------------CTTCGAAAAGTG 61863 Query 123285 TGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAA 123344 |||||| || ||||| || ||||| ||||| || | |||| |||| |||| || || | Sbjct 61864 TGTTCTCTACAGTTGCTCCGTGAATTGCACAAAGAAGTGCTGCACCGAGTACACCAGCTA 61923 Query 123345 CACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATAT 123404 | ||||||||||| ||||| || | ||| ||||||||||||||| | ||| | ||| Sbjct 61924 CTCCCATCATGTGGAATGGGTTAAGTGTCCAGTTGTGGAAACCTTGGAAGAAAAGAATAA 61983 Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTG 123464 |||| || ||| | || ||||| ||||||||||| |||||||||| || || |||| Sbjct 61984 AACGGAAAATTCCAGCTACACCAAATGATGGTGCAAAGAACCAACCTGATTGCCCAAGTG 62043 Query 123465 GATAGATCAGAAAGAT-GCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTG 123523 | || || || || | | || || || || || || |||||||| | |||||| Sbjct 62044 GGTAAATAAGGAATACAGATACA-AACACAGCAATTGGTGCTGAGAATGCAATCGCGTTG 62102 Query 123524 TAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGT 123583 || || | ||| ||| | || || |||||||| | ||||| || || || | | Sbjct 62103 TATGGACGAATTTGTACTGCACGAGCAATTTCAAATTGACGAAGCATAAATCCGATTAAT 62162 Query 123584 CCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACG 123643 ||||| |||| || | ||||| || |||||| || || ||||| ||||||| | Sbjct 62163 CCAAATGCTCCGTGAAGAGCTACGAATGTCCATAATCCACCAAGTTGACACCAACGTGTG 62222 Query 123644 AATGATCCTTGTGCTTCAGGTCCCCAAAG--GAACATGAGACTATGACCCATTGCGTCAC 123701 || ||||||||||| ||||||||||| ||| | | || | || |||| |||| Sbjct 62223 AAGTCACCTTGTGCTTCTGGTCCCCAAAGGAGAAGAAGTGAGTGTG--CCATCGCGTTTG 62280 Query 123702 CAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATAC 123761 || || || ||||||| || | |||||| || ||||| |||||| ||| | || Sbjct 62281 ATGGCGTTGATACTGCTGAAGTGAGGAAGTTACACCCTTCAAGGTATGAACTTGCTAAAC 62340 Query 123762 CATGTGTATACCATGATGTAACGAAGGTAGTTCC--TAAGAACCAACCACCGATTGATAG 123819 | ||||| |||||||| || ||||| || ||||| |||| ||| ||||| | || | Sbjct 62341 CGTGTGTGTACCATGAAGTTACGAATGTTGTTCCAGTAAG--CCATCCACCAAGTGCAAA 62398 Query 123820 ATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTT 123879 || ||||| || | | |||||| |||||||| |||| |||||| ||||| || | ||| Sbjct 62399 GTATGCACATGGGAATAATAAAAGTCCAGACCAACCTACGAATACGAAACGGTCACGCTT 62458 Query 123880 TAACCAGTCGTCAAGAACATCAAACCAACC 123909 | |||||| || | || |||||||| Sbjct 62459 AAGCCAGTCATCTACGTTGTCGAACCAACC 62488 >seq3 Length=741603 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 139298 CATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAAT 139357 ||| || || | || ||||| || ||||| ||||| || ||||||||||| | ||| Sbjct 649021 CATGTTCGCCAACAACGCTTGCGCCGTGCAAATGTTCGACGTCGCTTTGTCTCTGCGAAT 649080 Query 139358 ATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCA-GGATTGCCTTCGCTGTCCACTG 139416 ||||| ||||| ||||| | || | ||| | ||| || || || || || || | Sbjct 649081 GTGCTGTTCTCTCGTTTGCATCGCCATTCT-CAAGCACGGGTTCCCATCCGCATCGACGG 649139 Query 139417 ACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATG 139476 | ||| | |||||| || || ||| | ||| |||| || || || || ||||| Sbjct 649140 AAATACCGATAATTCTCCCTGGCATCAAACGCTTGTACTCTTCCGTGGTCGCCAAGAAGC 649199 Query 139477 CAGCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGC 139520 | || || ||||| ||||| |||| || | ||||| |||||| Sbjct 649200 CCGCGTGCGGACCGCCGTAGCCCAACGGCACGCCAAATCTTTGC 649243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998248012920