Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq13 114 2e-20 seq12 96.9 4e-15 seq14 87.8 2e-12 seq17 84.2 3e-11 >seq1 Length=1352724 Score = 127 bits (140), Expect = 2e-24 Identities = 552/864 (64%), Gaps = 27/864 (3%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||||| ||| | || | ||||| |||||| | | || || || | Sbjct 26390 CCCGCAGCACATGTTGATGAGAGTATCCATCGGTATCCACAAGAAGGATATCGAAAAGGC 26331 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | || || || ||| | |||| || || | | | ||||| | |||||| | || Sbjct 26330 TGTTGATACGTATCACATGTTGTCTGAACGTTGGATGACCCACGCGTCGCCAACCTTGTT 26271 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || ||||| || ||||||| | ||| ||||| | || || ||||| || Sbjct 26270 CAACGCCGGTACGCCGCGACCGCAACTCTCCTCGTGCTTTTTGATTTGCATGAAGGAAGA 26211 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | |||||||| | || | | ||| || ||| || || |||| || || Sbjct 26210 CTCCATTGAAGGTATCTACGACACGTTGAAGGAATGCGCGTGCATTTCCAAGTCCGCCGG 26151 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATC-TCGTA--TTCGGGGGAC 75507 |||||||| || || || || | | |||| | || ||||| || | || || Sbjct 26150 CGGTATTGGTTTGTCTATTCACGACATCCGCGCCACT---TCGTCGTACATTAGAGGCAC 26094 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 ||| ||| || | ||||| ||||| ||||||||||| || |||| ||| ||| | || Sbjct 26093 AAACGGTACCTCGAACGGTATCATTCCGATGCTTCGCGTGTTCAACGACACGGCGAGGTA 26034 Query 75568 TGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 || | |||| || || |||||||| | | || | ||| | ||||| ||||| Sbjct 26033 CGTGGACCAAGGCGGCGGTAAGCGCAAGGGCGCTTTTGCCATTTACCTCGAACCGTGGCA 25974 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 | || ||| | || | || || || ||| ||||| || | ||||| || | Sbjct 25973 CTCTGACATCTTCGACTGGCTCGACTTGCGAAAGAACCACGGGAAGGAAGAAGCGAGAGC 25914 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | | || | |||| |||||| || | |||||||| | || || || Sbjct 25913 TCGTGACTTGTTTTACGGTTTGTGGACGAACGATTTGTTCATGAAAAGAGTCGAAGAAAA 25854 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCG-ACGCGGTGGGTG 75803 || | ||| | | | || || || || || ||| | |||| | || | ||||| Sbjct 25853 CGGCAAGTGGACGTTAATGTGCCCGAACGAGTGCCCGGGTTTGTCCGAATGCTG-GGGTG 25795 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG------AGGGTA--GAGCCAATGC 75855 | ||||||||||| | ||||| ||||| ||| | | |||||| || | || | Sbjct 25794 AAGAGTTTGAAGCTTTGTACACCAAGTACGAAAAAGAAAACAAGGGTAAGAAGACGAT-C 25736 Query 75856 GACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 || ||||| || ||||| || ||||| || | || ||| ||||| | Sbjct 25735 AAC--GCCCAGCAGC-----TTTGGTTTGCGATTCTTGAAGCGCAAGTGGAAACTGGTAA 25683 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 || || ||| | | ||||||||| || ||| ||| |||||| | |||||||| || Sbjct 25682 CCCGTACATGTTGTTCAAGGATGCGTGCAACCGCAAGTCGAACCAACAAAATTTGGGCAC 25623 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 ||||| || || | ||||| || || | || | ||| ||| || || || Sbjct 25622 GATCAAATCGTCCAACTTGTGCACAGAGATCGTCGAATTCACCTCGCCGGAAGAAACTGC 25563 Query 76036 TGTTTGCAATTTGGCATCAATCGC 76059 ||||| || ||||| || ||||| Sbjct 25562 CGTTTGTAACTTGGCCTCCATCGC 25539 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 76491 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 76550 |||| ||| || ||| | ||||| |||||||| || || ||| | ||||| ||||||| Sbjct 25035 TTCGCAACTCCCTCTTGGTTGCACCGATGCCAACCGCGTCAACCTCCCAAATTTTGGGTA 24976 Query 76551 ATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTG 76610 | || || ||||||||||| || ||| | ||||| || ||||||| | | |||| Sbjct 24975 ACAACGAGTGCTTTGAACCGTATACATCGAACATTTATGCGAGAAGAGTGTTGTCCGGTG 24916 Query 76611 AGTTTGTCATTGTCAACAAGCAC 76633 | || | | |||||| ||||| Sbjct 24915 AATTCACCGTCGTCAACCAGCAC 24893 >seq13 Length=1091008 Score = 114 bits (126), Expect = 2e-20 Identities = 302/451 (67%), Gaps = 14/451 (3%) Strand=Plus/Plus Query 5777 CCAATTCACACCACCAGTACCTTCAAAGAGTGCGACACCCACAGTTGCACCGACTTGACA 5836 ||| || | ||| ||| |||||| ||| ||||| || ||||| ||||||||||| || Sbjct 302775 CCAGTTAATACCGCCAACACCTTCCAAGCAGGCGACGCCGACAGTGGCACCGACTTGGCA 302834 Query 5837 ATGTGTTGTGGAGAGTGGCCACCCGAGGCGAGAGCCAAGAATGATGACAGCGGCCGCGCC 5896 || || ||||| | ||||| ||||| ||||| || | || || || ||| ||||| Sbjct 302835 GTGAGTCGTGGACAACGGCCAGCCGAGACGAGAACCCATGATAATAACCATGGCGGCGCC 302894 Query 5897 AAGTTCAATACAGATACCACGACTCGGTGTAAGTTTTGCCATTTTTG--TACCAAGAGCC 5954 || || || || ||||| | ||| || | |||||| | | ||| ||||| || Sbjct 302895 GAGCTCGATGCAAATACCTCTGGACGGGGTCA-TTTTGCAAATCTTGCCGCCCAAG-GCG 302952 Query 5955 T-CAAGAATCTTATAGCCATATGTCGCGAGACCCACAACTATTCCACCAGCTCCGAGGGA 6013 | |||| ||||| || || || || | ||| | || || || || || | || Sbjct 302953 TGCAAG-ATCTTGTAACCGTACAAGGCCAAACCAATCACGATACCGAACGCACCCAAAGA 303011 Query 6014 GAGAATCCAATATGCGTCGTTACCCATTTCAGCA--TTCTTGGAGACCGTACCGGATTTA 6071 | ||||| || | || | |||| || ||| ||||| || ||| | ||| Sbjct 303012 CAAGATCCAGTAGGAATCATCGCCCA--TCGGCATCTTCTTCTTCACGCCACCAGCTTTG 303069 Query 6072 TAGATGGCGTAAATGGCGGCAAATGGTCCGATTGAATTGGCAACATCATTGGCACCGTGT 6131 || |||| | || ||||| || || |||| || |||||||| ||||| || ||||| Sbjct 303070 TAAATGGTGACGATAGCGGCGAACGGACCGACAGAGTTGGCAACGTCATTCGCGCCGTGG 303129 Query 6132 GCGAACGAATCACAACATGCCGTTAAGATCTG--AAGGTACCTCATAGAGTGTTCGGTCT 6189 | ||| | ||| | || || ||||| | || | ||| |||| | |||||||| Sbjct 303130 GAGAAGGCATCTAAGCAAGCAGTTAAAACTTGCAACGGT--CTCAACGCCAATTCGGTCT 303187 Query 6190 TTGTGTCAAATACCTCCGCATTGTCGTGGAT 6220 || ||| || || || || ||| ||||||| Sbjct 303188 TTTCGTCGAAGACTTCGGCGTTGGCGTGGAT 303218 >seq12 Length=1122692 Score = 96.9 bits (106), Expect = 4e-15 Identities = 260/384 (68%), Gaps = 18/384 (5%) Strand=Plus/Minus Query 13517 AAGAAGACCGATGGTG-CTCGCAAGTCCAAAATTACCGGTATTCCCAAGTTGGATGACGC 13575 |||||||||||||||| | || | | | | | || |||||||| |||||||| || || Sbjct 1065245 AAGAAGACCGATGGTGTCAAGCGATTGC-GATTGACTGGTATTCCGAAGTTGGACGATGC 1065187 Query 13576 GAACAAGGCGGGTACGG-CACAATCTGGAAAG--TGTACTCTCATTGTCACAGAGGGTGA 13632 |||||| || || ||| | ||| || ||||| || || || ||| | || ||||| || Sbjct 1065186 GAACAACGCCGG--CGGACGCAA-CTCGAAAGACTGCACGCTGATTTTAACCGAGGGGGA 1065130 Query 13633 TTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTACGGTGT 13692 ||| || ||| | | |||||| | ||| | || |||| || | || ||||||| || Sbjct 1065129 TTCTGCCAAAGCGTTGGCGGTTTCCGGTTTGTCCATCGTCGGAAGAGACAACTACGGGGT 1065070 Query 13693 GTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGGTGGCACAGCTCACATC 13752 ||| || | | || || | ||| ||||| ||||||||| | | || | | Sbjct 1065069 GTTTCCGTTGAGAGGGAAGTTATTGAACGTTCGCGACGCTTCGTTTGATCAAGTAAAGAA 1065010 Query 13753 AAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTT-CAACAAGGAAAAGACTACC 13811 || ||| ||| | | |||| |||| |||| ||| ||||| || ||| ||| Sbjct 1065009 CAATGTGGAAATCACCCACATCAAACAGAT-TTTGGGCTTGCAACACGGCAAAACGTACG 1064951 Query 13812 AAGATGTTTC--TGA--ACTTCGCTAT---GGTCGTCTTATGATTATGACAGATGCCGAT 13864 | || | ||| | | || | || || || || | ||||| ||||| ||| ||| Sbjct 1064950 ACGAAGATTCCATCAAGACGTTGCGATACGGGAAGT-TGATGATCATGACGGATCAAGAT 1064892 Query 13865 AATGATGGTTCTCACATCAAGGGT 13888 | |||||||| |||||||| ||| Sbjct 1064891 CACGATGGTTCGCACATCAAAGGT 1064868 >seq14 Length=1037991 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||||||||| || | | ||||| || || || || || |||||||||||||| || Sbjct 66347 TCCTTCGCCGAACGTTTGGTCGCGTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCTCT 66288 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||| | || || ||| | |||||| | || | ||||| || || |||||| || Sbjct 66287 TTCTGCTCAATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTCACCTTCTCCAAC 66228 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || | || ||| |||| || ||| | ||| || ||||| Sbjct 66227 GAGTTGATCTCCAGAGACGAAGGTTTGCACAGAGATTTTGC 66187 >seq17 Length=937610 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 177744 AGTAATCTTCTTTGTGAC-AAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGA 177802 |||||| || | ||||| ||||| | |||| |||||| |||||||||||||| | | Sbjct 352679 AGTAATTTTTCTGGTGACGAAAGTTTCC-CCTCTTCTCGGCGATTCGTGGTTGAACAAAA 352737 Query 177803 TTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGG 177862 | ||| ||| || ||||| | || || |||| ||| ||| ||| ||| | | Sbjct 352738 TCCCGTTGCACGCGAACATATCGTACGACTCTCTGTAGTTTACAACGGCCCAATACCCCA 352797 Query 177863 CCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAG 177922 |||||| | ||| | || ||||| ||||| || || ||| || | || ||| Sbjct 352798 TCAATTTCGCGACCGCGTACGGCGATCGCGGGTAAAACGGCGTCGTTTCGGACTGCGGAA 352857 Query 177923 TTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 | ||| | |||||||| ||| ||| || || || |||||||| Sbjct 352858 TCTCTTGCACTTTACCGTACAACTCGGACGTCGACGCTTGGTA 352900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569443400480