Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq15 475 5e-129 seq16 158 2e-33 seq6 152 7e-32 seq7 127 3e-24 seq17 120 4e-22 >seq15 Length=989707 Score = 475 bits (526), Expect = 5e-129 Identities = 1039/1545 (67%), Gaps = 22/1545 (1%) Strand=Plus/Plus Query 195345 GGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGT 195404 ||||| | || || || || || ||| | || |||||||| ||||| || || ||||| | Sbjct 624966 GGCAACACGACCGAGTGGAAATCATCGCCAACGACCAAGGGAACCGAACGACGCCATCTT 625025 Query 195405 ACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTA 195464 || || || || ||| ||| | | | || || | || || || || || | Sbjct 625026 TTGTCGCGTTCACGGATTCCGAAAGATTAATCGGCGACTCGGCGAAGAACCAAGTCGCGA 625085 Query 195465 TGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATA 195524 ||||||| | || || ||||||||||| ||||| | || || | |||||||| ||| Sbjct 625086 TGAACCCGAAAAACACCGTCTTTGACGCCAAGCGGTTAATCGGGAGAAAGTTTTCCGATC 625145 Query 195525 AGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATA 195584 | |||| ||| |||| || ||||| | || || | || || | || || | Sbjct 625146 CGCAAGTGCAACACGACATGAAGGAGTTTTCGTACACGATCGTGAAAGGGGAAGCGGAGA 625205 Query 195585 AGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTT 195644 | || |||||| | ||||| |||||||| |||||||| || || | || || |||| Sbjct 625206 AACCGATGATTGAAGTTGAGTTTCACGGGGAGAAGAAGACGTTCGCGGCGGAGGAGATTT 625265 Query 195645 CGTCTATGGTGTTGATTAAGATGA-AGGAGACTGCGGAATCTTTCATGGGTAAAACTGTG 195703 |||| ||||| ||| | ||||||| || || | || || | || |||| | | ||| Sbjct 625266 CGTCCATGGTTTTGGTGAAGATGAGAGAAGTC-GCCGAGGCGTTTTTGGGGAGAGACGTG 625324 Query 195704 AAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAG 195763 || | || || ||||| || || || ||||| | || || ||| |||| ||||| ||| Sbjct 625325 AAGAACGCCGTCGTGACCGTGCCGGCGTACTTTAACGACTCCCAAAGACAAGCGACCAAG 625384 Query 195764 GACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCT 195823 || || || | ||||| || | ||||| | ||||||||||| ||||| || |||||| Sbjct 625385 GATGCGGCGGTCATTGCCGGCTTGAACTGCTTGAGAATTATCAACGAACCGACCGCGGCT 625444 Query 195824 GCAATTGCTTATGGTCTGGACAAGAACAA--GGAC----GAAGATAAAAATGTATTGATC 195877 || || || || ||| |||||||||| || | | | || || || || ||||| Sbjct 625445 GCGATCGCGTACGGTTTGGACAAGAAGAACTCGTCCACGGCGGAGAAGAACGTGTTGATT 625504 Query 195878 TTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTC 195937 |||||| | || || ||||| || ||||| || | | | || |||| || || || Sbjct 625505 TTTGATTTGGGAGGCGGTACTTTCGATGTGTCTTTGTTGACCATCGAAGAAGGCATCTTT 625564 Query 195938 GAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTT 195997 ||||| ||||| || || || || || || | |||||||||||||||||| | ||| | Sbjct 625565 GAAGTCAAGGCAACGGCAGGGGACACGCACTTGGGTGGTGAAGATTTCGATACTCGTTTG 625624 Query 195998 CTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCT 196057 | || || | | |||||| ||||| | ||||| || || || || || | Sbjct 625625 AGCAACCACTTTGCCGCGGAGTTCAAGAGAAAGCACAAGAAGGACATCTCCGGCAACGCC 625684 Query 196058 AGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG 196117 || || | | || | || || || || ||| | ||||| ||||| | || || || Sbjct 625685 AGAGCGTTGAGACGTTTAAGAACCGCGTGCGAAAGAGCCAAGAGAACTTTGTCCTCCACC 625744 Query 196118 GCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATT 196177 || ||||| | || || || || || || || || || || ||||| || | || Sbjct 625745 GCGCAAACCTCCATCGAAATCGACTCCTTATTCGAAGGTATCGATTTCTACACCTCCATC 625804 Query 196178 ACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTT 196237 || | || | || |||||||| ||| || ||||| | ||||| |||||||| || Sbjct 625805 ACGAGAGCGAGATTCGAAGAGTTGAACATGGACTTGTTCCGCAAGTGCATGGAACCAGTC 625864 Query 196238 GAACAAGTACTT-CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGT 196296 | | |||| ||| | || || ||| | || ||| | || | ||| | || | || Sbjct 625865 G-AGAAGTGCTTGAGAGATGCCAAGTTCGACAAGGGCCAAGTCCACGAAGTCGTTTTGGT 625923 Query 196297 GGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAA 196356 || || || || | || |||||| |||| || |||| || ||||||||| || Sbjct 625924 CGGCGGTTCCACGAGAATCCCGAAGGTTCAGCAATTGCTCTCCGACTTCTTCAACGGCAA 625983 Query 196357 AGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGC 196416 || || ||| | ||||||||||| ||||| || || || || || ||||| || || Sbjct 625984 GGAGTTGTGCAAGTCCATCAACCCGGACGAAGCCGTCGCGTACGGCGCCGCCGTCCAAGC 626043 Query 196417 TGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGC 196476 ||| ||| | || || | | || | || |||||||| | || | | || || | Sbjct 626044 TGCCATTTTGTCCGGCGAAGGTAACGAAAAGGTCCAAGACTTGTTGTTGTTGGACGTCAC 626103 Query 196477 ACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGAT----A 196532 || | || ||||| | ||||| | || ||||| ||||| | ||||| | Sbjct 626104 GCCGTTGTCGATGGGTTTGGAAACCGTCGGCGGTGTCATGAC----CGTGTTGATCCCGA 626159 Query 196533 GGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAAC 196592 | ||||| || || ||||| ||||| |||||||| || || |||||||| || || || | Sbjct 626160 GAAACACGACGATCCCGACCAAGAAAGAACAAGTGTTCTCCACGTATTCTGACAACCAGC 626219 Query 196593 CAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTAC 196652 | || || || ||||| | ||||| ||||| || || | | || || || || Sbjct 626220 CGGGCGTGTTGATCCAAGTTTTCGAAGGCGAACGTTCGCGAACGAGAGACAA-CAACTTG 626278 Query 196653 TTGG--AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAA 196710 |||| || ||| || ||| || || || | || || ||||| || || || || || Sbjct 626279 TTGGGTAAATTT-GAATTGCAAGGCATCCCGCCGGCGCCGAGAGGCGTCCCGCAAATCAA 626337 Query 196711 TGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTC 196770 || |||||||| || ||||| || || || | ||||| | || || || ||| | | Sbjct 626338 CGTCTGCTTCGACATCGACGCGAACGGTATCTTGAACGTGTCTGCGGAAGATAAGTCCAC 626397 Query 196771 TGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAAT 196830 ||| || | |||||| || ||||| |||||||| | | || ||||| || || Sbjct 626398 CGGCCAAAAGAATAAGATTACCATCACCAACGACAAGGGAAGATTGTCCAAGGAAGACAT 626457 Query 196831 TGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 ||| | ||||| ||||| || || ||||||| | |||||||| Sbjct 626458 CGAAAGAATGGTCCAAGAAGCCGAGAAGTACAAAGCGGAAGACGA 626502 >seq16 Length=955652 Score = 158 bits (174), Expect = 2e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || || | ||||| ||||| ||||| | || |||||||| || Sbjct 707968 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTTGAGTCTTCC 707909 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| || ||||| ||||| |||||||| || || || |||||| Sbjct 707908 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707849 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | ||||| || ||||| ||| | ||||| || | || | || ||||||||| Sbjct 707848 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAAC 707789 Query 172042 GTTCAAAAGGAGTCTAC 172058 | || ||||||||||| Sbjct 707788 ATCCAGAAGGAGTCTAC 707772 Score = 152 bits (168), Expect = 7e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || || | ||||| ||||| ||||| | || || ||||| || Sbjct 707512 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCC 707453 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| || ||||| ||||| |||||||| || || || |||||| Sbjct 707452 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707393 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | ||||| || ||||| ||| | ||||| || | || | || ||||||||| Sbjct 707392 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAAC 707333 Query 172042 GTTCAAAAGGAGTCTAC 172058 | || ||||||||||| Sbjct 707332 ATCCAGAAGGAGTCTAC 707316 Score = 152 bits (168), Expect = 7e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || || | ||||| ||||| ||||| | || || ||||| || Sbjct 707740 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCC 707681 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| || ||||| ||||| |||||||| || || || |||||| Sbjct 707680 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707621 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | ||||| || ||||| ||| | ||||| || | || | || ||||||||| Sbjct 707620 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAAC 707561 Query 172042 GTTCAAAAGGAGTCTAC 172058 | || ||||||||||| Sbjct 707560 ATCCAGAAGGAGTCTAC 707544 >seq6 Length=663424 Score = 152 bits (168), Expect = 7e-32 Identities = 324/482 (67%), Gaps = 4/482 (1%) Strand=Plus/Minus Query 196376 AACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTT 196435 ||||| |||||||| ||||| |||||||| || || || | | ||| | || || | Sbjct 465896 AACCCAGATGAAGCTGTTGCATATGGTGCTGCAGTCCAAGGCGGGATTTTATCTGGCGAA 465837 Query 196436 GACAATAAT--AACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTC 196493 | | || |||| | || | || || |||||||| ||||| | | | ||| Sbjct 465836 GGGGGTGATGAAACGA--AGGACATACTTCTCCTTGATGTAGCACCTCTGACACAAGGTA 465779 Query 196494 TTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTA 196553 ||||||||| ||||| |||||||| || | || | || || || ||||| | Sbjct 465778 TTGAAACAGTTGGTGGCGTTATGACGAAGTTGATCCCACGTAATACTGTCATACCGACAA 465719 Query 196554 AGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTAT 196613 | || ||| ||| |||| ||| |||||||| | | ||| || || || | Sbjct 465718 AAAAATCTCAAACTTTTACAACATATCAAGATAATCAGCAAACTGTGATGATACAGGTTT 465659 Query 196614 ATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 ||| || ||| | || | |||||||| ||| ||||||| | || || | ||| Sbjct 465658 TTGAGGGTGAAAGAGCCATGACCAAGGATAATCATTTACTTGGTAAATTTGAACTCACGT 465599 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAA 196733 ||||| |||||||||| ||||||||||| || | ||| || || || || || | Sbjct 465598 CAATTCCCCCTGCACCCAGGGGTGTTCCACAAATCGAGGTTACGTTTGAAATTGATGCGA 465539 Query 196734 ATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGA 196793 |||| ||||| || ||| || || || || | |||| ||||| || || ||| | Sbjct 465538 ATGGGATTCTTAATGTCGGTGCGGAAGATAAAGGAACTGGTAAATCAGAGAAAATTACTA 465479 Query 196794 TTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGG 196853 | || || || || ||| | |||||| | || ||||||||||||||||| |||| || | Sbjct 465478 TAACAAACGATAAAGGGAGACTTTCTCAAGAAGAAATTGAACGTATGGTCGAAGAAGCTG 465419 Query 196854 AA 196855 || Sbjct 465418 AA 465417 Score = 107 bits (118), Expect = 3e-18 Identities = 177/249 (71%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 195728 GCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTA 195787 || || |||| |||| |||| || || || ||||| || || | | || ||||| || Sbjct 466594 GCATATTTCAATGATGCACAGCGTCAAGCAACAAAAGATGCGGGGACAATCGCGGGACTC 466535 Query 195788 AACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAG 195847 ||| | ||||||||||||||||| || ||||| || || || |||||||| |||||| Sbjct 466534 AACGTTGCAAGAATTATCAATGAACCTACTGCGGCGGCCATCGCCTATGGTCTTGACAAG 466475 Query 195848 AACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTC 195907 | |||| || ||| || || | ||| | ||||| || ||||| || || || ||||| Sbjct 466474 A--AAGG-CG-AGAAGAATAT-TCTTG-TTTTTGACCTTGGTGGAGGCACATTCGATGTT 466421 Query 195908 TCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCAT 195967 || || | | |||||| ||| |||| ||||| | | || ||| ||||| || Sbjct 466420 TCCATTTTAACTATTGATAACGGTGTATTTGAAGTTATTTCAACAAATGGAGATACGCAC 466361 Query 195968 CTAGGTGGT 195976 || || ||| Sbjct 466360 CTCGGGGGT 466352 >seq7 Length=519835 Score = 127 bits (140), Expect = 3e-24 Identities = 147/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 171869 TCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAA 171928 ||||| | |||| | || || ||||| |||||| | || || || || || ||||| | Sbjct 260576 TCTTTATAAAAAG--TGACGGGCAAAACGATCACCTTGGAAGTGGAATCCTCGGACACCA 260519 Query 171929 TCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGAC 171988 |||| ||| |||| || || || ||||| ||||||||||| || || || ||||| || Sbjct 260518 TCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCGGT 260459 Query 171989 TTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAA 172048 | || || || || |||||| | ||||| ||||| || | || ||||| ||| |||||| Sbjct 260458 TGATCTTCGCCGGGAAACAGTTAGAAGACGGACGCACTTTGGCGGATTATAACATTCAAA 260399 Query 172049 AGGAGTCTACTCTACAC 172065 | ||||| || ||||| Sbjct 260398 AAGAGTCCACGTTACAC 260382 >seq17 Length=937610 Score = 120 bits (132), Expect = 4e-22 Identities = 142/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || || || || ||||||||||| || ||||| || ||||| ||||| ||| |||| Sbjct 351530 CTCACGGGCAAGACGATCACCCTCGAAGTCGAGTCTTCGGACACTATCGACAACGTCAAG 351471 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 || || || ||||| || || ||||| || || |||||||| ||| | || || || || Sbjct 351470 GCGAAAATCCAAGACAAAGAGGGCATCCCGCCGGATCAGCAGCGATTGATCTTCGCCGGA 351411 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062 ||||| | |||||||| || || | || || || ||| ||||||| || || || | Sbjct 351410 AAACAATTAGAAGATGGCCGAACTTTAGCCGACTATAACATTCAAAAAGAATCCACCTTG 351351 Query 172063 CACCTTGTTCT 172073 || |||| ||| Sbjct 351350 CA-CTTGGTCT 351341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862227311120