Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq14 150 2e-30 seq1 140 4e-27 seq16 105 8e-17 seq17 89.7 6e-12 >seq14 Length=1037991 Score = 150 bits (166), Expect = 2e-30 Identities = 222/313 (71%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||||||||| || || ||| || ||||| |||||||| | | || || || ||||| Sbjct 65898 GTACTCGCCGACACGTTTCTCAAAGAAGTTCGTCTTGCCTTGCAAAGAAATTAATTCCAT 65957 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 ||| ||||||||| | || | ||| | ||| | | |||||| || ||||| | | Sbjct 65958 CCAGTCGAACGGGTTCGCGGTGTCGTACTCCTTCGCAAAGCCGAGCTGCGAGAGCAAGTG 66017 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||||| || |||||||||| | | ||| | | ||||||||||||||| |||||| Sbjct 66018 ATCGGCAACGTACTCGATGTAATCTCTCATCATGTCGGCGTTCATGCCGACGAGCGCGCA 66077 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCT 868938 ||||| || |||| ||||||||| ||||| || || || |||||| | |||| || Sbjct 66078 CGGCAACGCGTCGCACACAAACTCCTTCTCAATTTCAACCGCCTCGGTAACAATCTTTCT 66137 Query 868939 ---GGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 868995 | | ||| || ||| ||||| | ||||||||| |||| ||| ||||| || Sbjct 66138 CAACTTCTCCTCGCCC---GGCGTGTTGTTCAACATCGTGTAAAGCAAGCACGCAAAATC 66194 Query 868996 GCAGTGCAACCCT 869008 | |||||| ||| Sbjct 66195 TCTGTGCAAACCT 66207 Score = 96.9 bits (106), Expect = 4e-14 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 869171 CTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGG 869230 || ||| |||||||||| | ||||| |||||| |||| ||| || ||||| | | Sbjct 66196 CTGTGCAAACCTTCGTCTCTGGAGATCAACTCGTTGGAGAAGGTGAGCCCCGGCATCATG 66255 Query 869231 CCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 869290 || | |||||||||||| |||| | ||||||| ||| ||||| |||||||| |||||| Sbjct 66256 CCTCTCTTCTTGAGCCAGTAGATTGAGCAGAAAGAGCCGGAGAAGAAGATGCCTTCGACG 66315 Query 869291 GCGGCAAAGCCGATGAGCCGCTCGGCAAAGG 869321 ||| || ||| | || ||||| |||| Sbjct 66316 CAGGCGAACGCGACCAAACGTTCGGCGAAGG 66346 >seq1 Length=1352724 Score = 140 bits (154), Expect = 4e-27 Identities = 191/265 (72%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| ||||| | |||||||||||| || ||||| ||||| || | || ||||| || Sbjct 26025 TGGTCCACGTACCTCGCCGTGTCGTTGAACACGCGAAGCATCGGAATGATACCGTTCGAG 26084 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCG--GCGGCGCGCACCTTGTGCGCGGCAAAGC 1630183 ||||| ||||| | ||| || || | |||||| | | ||| | || | Sbjct 26085 GTACCGTTTGTGCCTCTAATGTA--CGACGAAGTGGCGCGGATGTCGTGAATAGACAAAC 26142 Query 1630184 CGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCT 1630243 | || |||||||| |||||||| ||| |||||| | || | |||||||||||| || | Sbjct 26143 CAATACCGCCGGCGGACTTGGAAATGCACGCGCATTCCTTCAACGTGTCGTAGATACCTT 26202 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || ||||| |||||||| | | ||||||||| ||| |||||| ||| ||| | Sbjct 26203 CAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAGTTGCGGTCGCGGCGTAC 26262 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGC 1630328 |||||||||| | || |||| ||| Sbjct 26263 CGGCGTTGAACAAGGTTGGCGACGC 26287 Score = 116 bits (128), Expect = 5e-20 Identities = 111/140 (79%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 1628463 CGTCCACAGTGCGTAAAAGAGGTCGCGCGCCC--GGTTCTCCTCCTTGCCGTGGTTCTTT 1628520 |||||||| ||||||| | ||| || || | | |||| ||||| |||||||||||| Sbjct 25886 CGTCCACAAACCGTAAAACAAGTCACGAGCTCTCGCTTCT--TCCTTCCCGTGGTTCTTT 25943 Query 1628521 TTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 1628580 | |||||||||||||| ||||| | ||||||||| || ||||| |||||| ||| Sbjct 25944 CGCAAGTCGAGCCAGTCGAAGATGTCAGAGTGCCACGGTTCGAGGTAAATGGCAAAAGCG 26003 Query 1628581 CCCTTGCGCTTGCCGCCGCC 1628600 ||||||||||| |||||||| Sbjct 26004 CCCTTGCGCTTACCGCCGCC 26023 Score = 86.0 bits (94), Expect = 8e-11 Identities = 145/209 (69%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGC 1254399 || |||||| ||| || ||| ||||| || |||| || ||||| || | ||| Sbjct 891201 GCTTGGCCAATTCACCCGGCAAGATCAATCGAACGGACGTTTGGATTTCTCTGGACGTCA 891142 Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 || ||| || |||||| | | |||| | |||| || || |||| |||| Sbjct 891141 CGGTCGGCTT---CTTGTTGTATCGGGCCAACTTGGCGGCTTCAGTCGCGATCTTTTCGA 891085 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||| || |||||||||| ||||| |||| ||||||||| ||| | Sbjct 891084 AGATGTCGTTGATGAAGGAGTTCATGATGCTCATCGCCTTGGAGGAGATGCCGGTGTCCG 891025 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| ||||| | |||||||||||| Sbjct 891024 GGTGCACTTGCTTCAAGACCTTGTAGATG 890996 >seq16 Length=955652 Score = 105 bits (116), Expect = 8e-17 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | |||||||| |||||||||| |||||| ||| | | || ||| | || Sbjct 698014 TGCAACCCTTCGTCTCGACTGATCAACTCGTTGGAAAACGTCAAACCTTTCATCAATCCT 697955 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 | |||||| |||||||||||||||||||||||||| ||| || ||||| || ||| Sbjct 697954 CTCTTCTTTAGCCAAAAGATGGCGCAGAAACTGCCGCTGAAGAAAATGCCTTCCACGCAT 697895 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGT-GTCGAGGCCCTCCTTGTTGATCCACTTCAT 869352 || || |||| | || |||||||| | | ||| | | | |||||| ||||| Sbjct 697894 GCGAAACCGACTAAACGTTCGGCAAACCTCGCCGACGAAGAC----TCGATCCATTTCAT 697839 Query 869353 CGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAA 869403 |||||| || ||||| || |||| | || | ||| | || || ||||| Sbjct 697838 CGCCCAATCCGCCTTCTTTTTCACGGTTGGAATCGTATGAATCGCTCGAAA 697788 Score = 86.0 bits (94), Expect = 8e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| || |||||||||| ||| || ||||||| || ||| |||| | || || | Sbjct 697724 GTGAATATTCTCGATGGATTGCTGAAACGCGTAAAACGCTCTCGCCTCGGGAACCTGAAT 697665 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||| ||||| ||||| || | ||||| ||||| ||||| |||||||||||| Sbjct 697664 CTCTTTCATAAACCGCACGCATAAATTCTCCAAGACGATACCGTCCGAGGCGGCGAAAAA 697605 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGT 869786 |||| |||||| ||||||| || |||||| Sbjct 697604 CGCCAAAACGTGCGTGATAAAATGTTGCTCGT 697573 >seq17 Length=937610 Score = 89.7 bits (98), Expect = 6e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGCGTGC 1254399 || |||||| ||| || ||| ||||| | ||||| || ||||| || || ||| Sbjct 270346 GCTTGGCCAATTCACCCGGCAAGATCAATCTCACGGACGTTTGGATTTCTCTGCTCGTCA 270405 Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 || ||| || |||||| | ||||| | |||| || || |||| |||| Sbjct 270406 CGGTCGGCTT---CTTGTTGTATCTCGCCAACTTGGCGGCTTCCGTCGCGATCTTTTCGA 270462 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||| || |||||||||| ||||| |||| ||||||||| ||| | Sbjct 270463 AGATGTCGTTGATGAAGGAGTTCATGATGCTCATCGCCTTGGAGGAGATGCCGGTGTCCG 270522 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| ||||| | |||||||||||| Sbjct 270523 GGTGCACTTGCTTCAAGACCTTGTAGATG 270551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137476641657