Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq12 127 2e-24 seq7 122 8e-23 seq17 120 3e-22 seq16 118 1e-21 seq1 114 1e-20 >seq12 Length=1122692 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 24718 TAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AA 24776 |||||| | || || ||||| || ||||||||||| || || | ||||| | || || Sbjct 917154 TAAAACTTTGACTGGGAAAACCATCACGCTCGAAGTCGAGTCCTCGGACACGATCGACAA 917095 Query 24777 CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCT 24836 || ||| | ||| || |||||||| || || || || || || || || || ||||| | Sbjct 917094 CGTGAAAGCGAAA-ATTCAAGACAAGGAGGGCATTCCGCCGGACCAGCAGCGATTGATTT 917036 Query 24837 TTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAAT 24896 | ||||| |||||| | || || ||||| | | ||||| ||||| ||||| |||| Sbjct 917035 TCGCCGGTAAACAGTTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAAT 916976 Query 24897 CGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 | || | |||||||||||||| ||||| || ||||| Sbjct 916975 CAACCTTGCACTTGGTGTTGCGTTTGCGAGGCGGCGG 916939 >seq7 Length=519835 Score = 122 bits (134), Expect = 8e-23 Identities = 158/212 (75%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 24711 TCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAG 24770 ||||||| |||| | || || ||||| || || | ||||| ||| || | ||||| Sbjct 260576 TCTTTATAAAAAG--TGACGGGCAAAACGATCACCTTGGAAGTGGAATCCTCGGACACCA 260519 Query 24771 TAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGT 24829 | || |||| || | ||| ||||||||||| ||||| || ||||| || || || || Sbjct 260518 TCGACAACGTCAAGGCGAAA-ATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCGG 260460 Query 24830 TTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTATAACATT 24886 |||||||| |||||||||||| | || || || || || || | |||||||||||| Sbjct 260459 TTGATCTTCGCCGGGAAACAGTTAGAAGA--CG-GACGCACTTTGGCGGATTATAACATT 260403 Query 24887 CAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || || || ||||||||||||| || Sbjct 260402 CAAAAAGAGTCCACGTTACACTTGGTGTTACG 260371 >seq17 Length=937610 Score = 120 bits (132), Expect = 3e-22 Identities = 163/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 24713 TTTAT-TAAAAC-GCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAG 24770 ||||| || ||| ||| || || || || || || |||||||| || | | ||||| Sbjct 351544 TTTATGTATAACAGCTCACGGGCAAGACGATCACCCTCGAAGTCGAGTCTTCGGACACTA 351485 Query 24771 TAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGT 24829 | || |||| || | ||| |||||||||||||| || || || || ||||| || || Sbjct 351484 TCGACAACGTCAAGGCGAAA-ATCCAAGACAAAGAGGGCATCCCGCCGGATCAGCAGCGA 351426 Query 24830 TTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAA 24889 |||||||| ||||| ||||| | || ||| ||| | | || |||||||||||| Sbjct 351425 TTGATCTTCGCCGGAAAACAATTAGAAGATGGCCGAACTTTAGCCGACTATAACATTCAA 351366 Query 24890 AAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || | |||||||| ||||| |||||||| ||| Sbjct 351365 AAAGAATCCACCTTGCACTTGGTCTTGCGTTTGCGCGGCGGC 351324 >seq16 Length=955652 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || | || || ||||| || ||| | ||||| || | | Sbjct 707513 GATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTC 707454 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| ||||| || || || ||||| Sbjct 707453 CGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCA 707394 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||| || ||||| || ||| | || || |||| || | ||||| || Sbjct 707393 GCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAA 707334 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| || ||||| || || | |||||||||||||| || || || |||| Sbjct 707333 CATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTACGAGGCGGCG 707284 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || | || || ||||| || ||| | ||||| || | | Sbjct 707741 GATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTC 707682 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| ||||| || || || ||||| Sbjct 707681 CGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCA 707622 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||| || ||||| || ||| | || || |||| || | ||||| || Sbjct 707621 GCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAA 707562 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || | |||||||||||||| ||| | || || Sbjct 707561 CATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTGAGAGGCGG 707514 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || | || || ||||| || ||| | ||||| || | | Sbjct 707969 GATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTTGAGTCTTC 707910 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| ||||| || || || ||||| Sbjct 707909 CGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCA 707850 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||| || ||||| || ||| | || || |||| || | ||||| || Sbjct 707849 GCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAA 707790 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || | |||||||||||||| ||| | || || Sbjct 707789 CATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTGAGAGGCGG 707742 >seq1 Length=1352724 Score = 114 bits (126), Expect = 1e-20 Identities = 548/856 (64%), Gaps = 25/856 (3%) Strand=Plus/Plus Query 139081 ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCA 139140 || ||||| | ||| || || || ||| || || | || ||||||| || || | Sbjct 25542 ATGGAGGCCAAGTTACAAACGGCAGTTTCTTCCGGCGAGGTGAATTCGACGATCTCTGTG 25601 Query 139141 CACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCA 139200 ||||| || | |||||||| || ||||||||||| || || ||||| || ||| Sbjct 25602 CACAAGTTGGACGATTTGATCGTGCCCAAATTTTGTTGGTTCGACTTGCGGTTGCACGCA 25661 Query 139201 TCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT-GAATTTGAA 139259 || ||| | | ||| ||||| | |||||||||||||| | || | ||| | | || Sbjct 25662 TCCTTGAACAACATGTACGGGTTACCAGTTTCCACTTGCGCTTCAAGAATCGCA----AA 25717 Query 139260 C--AAGTCCCTAGCTTGTATTTGA-CGCA--CGTAAAGTTCGTCGCGCT--CGTACTTTT 139312 | ||| || ||| | |||| || | || || | | | ||||||| Sbjct 25718 CCAAAG---CT-GCTGGGCGTTGATCGTCTTCTTACCCTTGTTTTCTTTTTCGTACTTGG 25773 Query 139313 CGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGAC 139372 ||| | | || || |||||| || || || | | | | |||| || || | Sbjct 25774 TGTACAAAGCTTCAAACTCTTCACCCCAGCATTCGGACAAACCCGGGCACTCGTTCGGGC 25833 Query 139373 ACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACA 139432 |||| | || ||| |||||| | | ||| | ||||||||| ||| |||||| Sbjct 25834 ACATTAACGTCCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACA 25893 Query 139433 AAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTT-CATGTTA 139491 || || | | ||| || || || || |||||| ||| || | | || || || Sbjct 25894 AACCGTAAAACAAGTCACGAGCTCTCGCTTCTTCCTT-CCCGTGGTTCTTTCGCAAGTCG 25952 Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 || | || || | ||||| |||||| ||||| || || ||||| | ||||| || || Sbjct 25953 AGCCAGTCGAAGATGTCAGAGTGCCACGGTTCGAGGTAAATGGCAAAAGCGCCCTTGCGC 26012 Query 139552 TT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 || ||| ||||| || |||| | | | | ||||| ||||| | |||||| Sbjct 26013 TTACCGCCGCCTTGGTCCACGTACCTCGCCGTGTCGTTGAACACGCGAAGCATCGGAATG 26072 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGG--GACTGTTGCGAGCTCGGACGTCAT 139666 | |||| ||| || ||||| |||| | ||| ||| | | | || |||| ||| | Sbjct 26073 ATACCGTTCGAGGTACCGTTTGTGCCTCTAATGTACGAC-GAAGTG-GCGCGGATGTCGT 26130 Query 139667 GTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCT 139726 | | | | || || |||||| | | ||||| || | |||| || || || | Sbjct 26131 GAATAGACAAACCAATACCGCCGGCGGACTTGGAAATGCACGCGCATTCCTTCAACGTGT 26190 Query 139727 CGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCG 139786 |||| |||||| ||| ||| |||| ||| | || |||||| || || ||||||| Sbjct 26191 CGTAGATACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAGTTGCG 26250 Query 139787 GTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACA 139846 || | ||| ||||| |||| || || |||||| || | | ||| |||| Sbjct 26251 GTCGCGGCGTACCGGCGTTGAACAAGGTTGGCGACGCGTGGGTCATCCAACGTTCAGACA 26310 Query 139847 TCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTC 139906 || | ||||| || | || | | |||||| | ||||||||||| || |||| Sbjct 26311 ACATGTGATACGTATCAACAGCCTTTTCGATATCCTTCTTGTGGATACCGATGGATACTC 26370 Query 139907 GCATCAGCATATGTTG 139922 ||||| ||| || || Sbjct 26371 TCATCAACATGTGCTG 26386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897481901880