Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-29 seq13 141 1e-28 seq12 95.1 2e-14 seq14 93.3 5e-14 seq2 91.5 2e-13 >seq1 Length=1352724 Score = 143 bits (158), Expect = 3e-29 Identities = 554/861 (64%), Gaps = 21/861 (2%) Strand=Plus/Plus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || ||||| || ||||| || || || ||| ||| | || | || ||| Sbjct 25539 GCGATGGAGGCCAAGTTACAAACGGCAGTTTCTTCCGGCGAGGTGAATTCGACGATCTCT 25598 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || |||||||| || ||||| |||||||| | |||||| ||| ||||||| Sbjct 25599 GTGCACAAGTTGGACGATTTGATCGTGCCCAAATTTTGTTGGTTCGACTTGCGGTTGCAC 25658 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||||||| | | |||||| || | || || ||| || | || ||||| || | Sbjct 25659 GCATCCTTGAACAACATGTACGGGTTACCAGTTTCCACTTGCGCTTCAAGAATCGCAAAC 25718 Query 111416 CAAACATCGGCGGCTGG---TACAATGGCGT-TGGCCCGTCCCTCCGCCT-CGTACTTTG 111470 |||| || ||||| | | | | | | ||| | | | | ||||||| | Sbjct 25719 CAAA-----GCTGCTGGGCGTTGATCGTCTTCTTACCCTTGTTTTCTTTTTCGTACTTGG 25773 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGT-CGGAGAGACCTGGTGCCTTGTCTGGA 111529 |||| | ||||||||||| |||||| | || | |||| | ||| || || || || Sbjct 25774 TGTACAAAGCTTCAAACTCTTCACCC-CAGCATTCGGACAAACCCGGGCACTCGTTCGGG 25832 Query 111530 CAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 || | | | ||| | || ||| || || | |||||||| | || ||||| Sbjct 25833 CACATTAACGTCCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCAC 25892 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 | |||| | || | | | || ||||| | || ||||| ||| || || Sbjct 25893 AAACCGTAAAACAAGTCACGAGCTCTCGCTTCTTCCTTCCCGTGGTTCTTTCGCAAGTCG 25952 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG- 111708 || | || | ||| || | |||||| || || || || | || | || ||||| || Sbjct 25953 AGCCAGTCGAAGATGTCAGAGTGCCACGGTTCGAGGTAAATGGCAAAAGCGCCCTTGCGC 26012 Query 111709 --ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 || || |||| | || || | ||| ||| |||| || ||||||||||| ||||| Sbjct 26013 TTACCGCCGCCTTGGTCCACGTACCTCGCCGTGTCGTTGAACACGCGAAGCATCGGAATG 26072 Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAA--TACGA-GATTTATTGGCTCTCACATCA 111823 ||||| | || ||| ||||| || | || ||||| || | |||| | | || Sbjct 26073 ATACCGTTCGAGGTACCGTTTGTGCCTCTAATGTACGACGA---AGTGGCGCGGATGTCG 26129 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 || || || |||||||| || || |||| || || ||| || ||| | | || Sbjct 26130 TGAATAGACAAACCAATACCGCCGGCGGACTTGGAAATGCACGCGCATTCCTTCAACGTG 26189 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | |||||||| | || ||||| ||||| || || | ||||| ||| | ||| Sbjct 26190 TCGTAGATACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAGTTGC 26249 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 112003 |||| || ||||| || ||||| | |||||| | ||||| | | | || || ||| Sbjct 26250 GGTCGCGGCGTACCGGCGTTGAACAAGGTTGGCGACGCGTGGGTCATCCAACGTTCAGAC 26309 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 | | ||| || || || | | || || || | | |||||| ||||| | || Sbjct 26310 AACATGTGATACGTATCAACAGCCTTTTCGATATCCTTCTTGTGGATACCGATGGATACT 26369 Query 112064 CGCATGAACATGTACTGTGGG 112084 | ||| ||||||| ||| ||| Sbjct 26370 CTCATCAACATGTGCTGCGGG 26390 Score = 95.1 bits (104), Expect = 2e-14 Identities = 327/503 (65%), Gaps = 19/503 (4%) Strand=Plus/Plus Query 110662 GTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGT 110721 ||||| |||||| | | || ||||| | | ||||||| || ||||| | ||| Sbjct 24893 GTGCTGGTTGACGACGGTGAATTCACCGGACAACACTCTTCTCGCATAAATGTTCGATGT 24952 Query 110722 GTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 110781 || ||||||||||| || || |||||||| ||||| | ||| || || |||||||| || Sbjct 24953 ATACGGTTCAAAGCACTCGTTGTTACCCAAAATTTGGGAGGTTGACGCGGTTGGCATCGG 25012 Query 110782 TGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCA 110841 ||| | ||| || ||| |||| || | || |||| ||| | | | ||| Sbjct 25013 TGCAACCAAGAGGGAGTTGCGAACGCCGTGCTTGGCGATGGATTCTCTCAACGCGCTCCA 25072 Query 110842 GTCGTAGTTGA-----GCTTGG--TTTC---ACCTTCCCACATGTCAAACTGAAGCAC-C 110890 | ||| || | || || |||| | | |||||||||| || | ||| | Sbjct 25073 GCCGT-GTCTATCGCCGCCCGGCATTTCGGTAACGCCCCACATGTCCGGTTGCAACACAC 25131 Query 110891 CCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA 110950 |||||| | |||| ||||| || ||| ||| || | || | ||| || | ||| Sbjct 25132 CCTTGGAAACCGGG-GAACCTTCGTAGGATTCGTACGTGCCCTCTTCTTTCGCGAGTTC- 25189 Query 110951 CAGCTCG---CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCC 111007 | ||| | | || | ||| || || || |||||||| || |||| || Sbjct 25190 --GTTCGATTCTTGCAACGCCGCGAAGTAAATCGTCTCAAAGATTTCGGCGTTCAACTTT 25247 Query 111008 TTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGA 111067 | || || || ||||| | ||| | ||| |||||||| || || | ||||| Sbjct 25248 TGCGCCTCCGGAGAGTCAAACGGTAAGCCGAGCAAGATAAATACGTCAGCCAAGCCTTGG 25307 Query 111068 ACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAA 111127 |||||||||||||| |||||||| ||| || || | |||||| || || || ||| Sbjct 25308 ACACCCAAACCAATCGGTCTGTGCTTCATGTTCGATCTCTTCGCAGTTTCGACCGGGTAA 25367 Query 111128 AAATTTCTGTCAATGACTCGGTT 111150 | || ||| |||| ||||| Sbjct 25368 TAGTTGACGTCGATGATGCGGTT 25390 >seq13 Length=1091008 Score = 141 bits (156), Expect = 1e-28 Identities = 318/471 (68%), Gaps = 10/471 (2%) Strand=Plus/Minus Query 190185 TGAAGATGGAACAGTTCAAGCCATCCACGATAATGCCGAACAATTTGACGCAAGGACTGA 190244 |||||||| || ||| || ||||||| || |||||| || |||| || ||| || Sbjct 303240 TGAAGATGAAATTGTTGCCGCGATCCACGCCAACGCCGAAGTCTTCGACGAAAAGACCGA 303181 Query 190245 ATACTCTATGCGATATCTACAAATCTTGACTGCGTGTTGTGATTCTTTTGCACACGGTGC 190304 || | || || | ||| | || ||||| || | ||| | || | ||||| || Sbjct 303180 ATTGGCGTTGAGACCGTTGCAAGTTTTAACTGCTTGCTTAGATGCCTTCTCCCACGGCGC 303121 Query 190305 AAATGATGTCGCCAATTCAATCGGCCCATTTGCCGCTATTTATGCCATCTACAAATCGGG 190364 ||||| || ||||| || |||| || || |||||||| |||| |||||| | || Sbjct 303120 GAATGACGTTGCCAACTCTGTCGGTCCGTTCGCCGCTATCGTCACCATTTACAAAGCTGG 303061 Query 190365 TAAAGTCAGTAAGAA--TGCCGACATGGGTAATGACGCGTATTGGATTCTCTCACTCGGT 190422 | || | ||||| |||||| |||| |||| | || ||||| | || | ||| Sbjct 303060 TGGCGTGAAGAAGAAGATGCCGA--TGGGCGATGATTCCTACTGGATCTTGTCTTTGGGT 303003 Query 190423 GCCACCGGTATCGTTGCGGGTCTCTCCCTCTACGGTTACAAGATTCTAAACGCCCTTGGC 190482 || ||||||||| ||| | || | |||||||||||||| | ||||| | ||| Sbjct 303002 GCGTTCGGTATCGTGATTGGTTTGGCCTTGTACGGTTACAAGATCTTGCACGCCTTGGGC 302943 Query 190483 ACTAAAATG-GCAAAACTTACGCCAAGTC--GTGGTATTTGCATTGAACTTGGTGCGGCC 190539 || || |||||| | || || ||| | ||||||||||| || || || || ||| Sbjct 302942 GGCAAGATTTGCAAAA-TGACCCC--GTCCAGAGGTATTTGCATCGAGCTCGGCGCCGCC 302886 Query 190540 GCTGTGATCATTTTGGGATCACGATTGGGTTGGCCTCTCTCTACGACGCATTGCCAAGTT 190599 || || || |||| || || | || ||||| | || ||||| || |||||||| Sbjct 302885 ATGGTTATTATCATGGGTTCTCGTCTCGGCTGGCCGTTGTCCACGACTCACTGCCAAGTC 302826 Query 190600 GGTGCAACCGTTGGTGTTGCTCTCTTTGAAGGCACGGGAGGTGTCAACTGG 190650 ||||| || || || || || ||| ||||| || ||| | |||||| Sbjct 302825 GGTGCCACTGTCGGCGTCGCCTGCTTGGAAGGTGTTGGCGGTATTAACTGG 302775 Score = 113 bits (124), Expect = 6e-20 Identities = 300/456 (66%), Gaps = 2/456 (0%) Strand=Plus/Minus Query 189463 TTTGGAATAGGTGCAAATGATGTTGCCAACGCTTTCGCAACATCAGTTGGATCAGGGGCT 189522 ||||| || || || || ||||| || ||||| ||||| || || || || || || || Sbjct 304139 TTTGGCATCGGCGCGAACGATGTCGCGAACGCGTTCGCGACCTCGGTCGGCTCCGGCGCG 304080 Query 189523 TTGAAAGTTAAACAAGCCGTACCACTTGCGGCTGTGTGTGAATTCTCGGGGTCTCTGTTT 189582 || |||| || | || || || ||||| |||||| |||| | | ||| Sbjct 304079 GTGTCGATTAAGTTGGCGATTATGCTCGCCGCCGTGTGCGAATTCACGGGTGCCTTATTT 304020 Query 189583 ATGGGAAGTCATGTCGTAAAAACAATACGAAAAGGAATCAGCGATCAAGAATGTTTTGTT 189642 ||||| ||| || | |||| || ||||| ||| ||| | |||| ||| Sbjct 304019 ATGGGTTCTCACGTGACCGAGGCAATCCGTAAAGGGATCGCGGATTACAAATGCTTTACC 303960 Query 189643 GACGACCCCGGACTTCTCATGTATGGATGTTTATGTGTTATACTGTCAGTCGC-TATATG 189701 |||| || | | || | ||||| || || || || || | | | || ||| || Sbjct 303959 AACGATCCGGCAATTATGATGTACGGGTGCTTGTGCGTGTTGGCCGC-GACGAGTATTTG 303901 Query 189702 GTTAATTGTTGCGTCTTATTTTGAAATGCCTGTATCTACAACACATTCATGTGTCGGTGG 189761 ||| || | ||||| ||||| || ||||| || || || || || || || ||||| || Sbjct 303900 GTTGATGTTGGCGTCGTATTTGGAGATGCCGGTCTCGACGACGCACTCTTGCGTCGGCGG 303841 Query 189762 CATGATTGGAATGACGATGGTTGCGAGAGGATCTAATTGCGTTACATGGATTGCAAAATC 189821 ||||||||| ||||| |||| | ||||| || ||||| | ||| |||| Sbjct 303840 CATGATTGGCATGACTTTGGTCACCAGAGGTCAAAAGTGCGTCATCTGGTCAAAAAAAGT 303781 Query 189822 CAACCAATTCCCATATGTCAAGGGTGTCGTTGCCATTATCGTTTCATGGTTACTCTCACC 189881 || |||| || || || || ||||| | || ||| || || ||||| ||||| || Sbjct 303780 TGACGAATTTCCGTACGTTAAAGGTGTTGCCGCGATTGTCTGCTCGTGGTTGCTCTCTCC 303721 Query 189882 GATTATTTCGGGACTTTTTGCTTCTTCGTTATTTTT 189917 |||| |||| || ||| || | | | || ||||| Sbjct 303720 GATTGTTTCCGGCGCTTTCGCGTTTGCCTTGTTTTT 303685 >seq12 Length=1122692 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 182672 CGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACG 182731 ||||||||| ||||| ||| | || || | | || ||||| ||||||| || | Sbjct 1065027 CGAAGCGTCGCGAACGTTCAATAACTTCCCTCTCAACGGAAACACCCCGTAGTTGTCTCT 1065086 Query 182732 ACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAAT 182791 || |||| || | ||| | |||||| | | ||| || ||||| ||||| || | ||| Sbjct 1065087 TCCGACGATGGACAAACCGGAAACCGCCAACGCTTTGGCAGAATCCCCCTCGGTTAAAAT 1065146 Query 182792 GAGAGTACA--CTTTCCAGATTGTG-CCGTACCCGCCTTGTTCGCGTCATCCAACTTGGG 182848 || || || ||||| || ||| | ||| || || |||||||| || |||||||| || Sbjct 1065147 CAGCGTGCAGTCTTTCGAG-TTGCGTCCG--CCGGCGTTGTTCGCATCGTCCAACTTCGG 1065203 Query 182849 AATACCGGTAATTTTGGACTTGCGAG-CACCATCGGTCTTCTT 182890 |||||| || | | | | | || | |||||||||||||||| Sbjct 1065204 AATACCAGTCAATC-GCAATCGCTTGACACCATCGGTCTTCTT 1065245 >seq14 Length=1037991 Score = 93.3 bits (102), Expect = 5e-14 Identities = 300/454 (66%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCAT-CAAGGCTAATGTTTTCCAT 122429 || || ||||| || |||||||||||||| ||||| || | ||| | ||| |||||| Sbjct 65899 TACTCGCCGACACGTTTCTCAAAGAAGTTCGTCTTGCCTTGCAAAGA-AATTAATTCCAT 65957 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGAC 122488 |||| || || ||| | || | | | | ||| || | || ||| | Sbjct 65958 CCAGTCGAACGGGTTCGCGGTGT-CGTACTCCTTCGCAAAGCCGAGCTGCGAGAGCAAGT 66016 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 |||| | || ||||| ||||| || |||| | || | |||||| |||| ||| | Sbjct 66017 GATCGGCAACGTACTCGATGTAATCTCTCATCATGTCGGCGTTCATGCCGACGAGCGCGC 66076 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | || | ||||| | | ||| | |||||||| ||||||||||| | || || | | Sbjct 66077 ACGGCAACGCGTCGCACACAAACTCCTTCTCAATTTCAACCGCCTCGGTAACAAT--CTT 66134 Query 122609 GGATAGTTTCGG-TAGTGGGTC-TATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAACT 122665 | ||| | | | | | || ||| || || | ||| |||| |||| | Sbjct 66135 TCTCAACTTCTCCTCGCCCGGCGTGTTGTTCAACATCGTGTAAAGCAAGCACG-CAAAAT 66193 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| | ||| || |||| ||| || | || || |||||| || || ||||| | Sbjct 66194 CTCTGTGCAAACCTTCGTCTCTGGAGATCAACTCGTTGGAGAAGGTGAGCCCCGGCATCA 66253 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 || | |||||| | ||| || || | |||||| || |||||||||||||| || || | Sbjct 66254 TGCCTCTCTTCTTGAGCCAGTAGATTGAGCAGAAAGAGCCGGAGAAGAAGATGCCTTCGA 66313 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 | || || ||||| | | |||||||||||||| Sbjct 66314 CGCAGGCGAACGCGACCAAACGTTCGGCGAAGGA 66347 >seq2 Length=794368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 249/378 (66%), Gaps = 15/378 (4%) Strand=Plus/Plus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| |||||||| || ||||| || | | |||| ||| | | ||| | || | Sbjct 302488 CTTGACGATCAAATCGTCCCGGACGCAACAAGGCGGAATCCAAAACGTCCGGTCTGTTCG 302547 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATT 11564 | ||||| | || | | |||||| | || || |||||||| || ||||| || | Sbjct 302548 TCGCCGCCAAGACGATGACGCCAGTGTTCCCTTCGAAACCATCCATTTCCGTGAGCAACT 302607 Query 11565 GATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTT 11622 ||||||| ||||||||||||||||| || | | ||| || | || || || | Sbjct 302608 GATTAATCGTTTGTTCTCTCTCATCGTTACC--ACCGCCCATGCCGGAACCACGCTGTCT 302665 Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGG-----TTGATTTTCGCGGGCG 11677 || || |||||||||||||| |||||||| ||||| || | ||||| ||| Sbjct 302666 CCCGACGGCATCAATCTCATCGATGAAGACGATACACGGCGCCTTCGATTT-----GGCT 302720 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 |||| || | ||| | || | || || || || || |||| || || || | Sbjct 302721 TTTTCGAACAAATCTCTGACACGAGACGCGCCGACGCCGACGAACAATTCAACGAACTCG 302780 Query 11738 GCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 | || | |||| || ||| || ||| | |||||| |||| || ||| | | Sbjct 302781 GACGCCGCGCACGAGAAGAACGGAACACCGGCTTCACCGGCGACCGCCTTGGCCAACAAC 302840 Query 11798 GTCTTTCCCGTACCTGGC 11815 ||||| |||||||| ||| Sbjct 302841 GTCTTACCCGTACCCGGC 302858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031835141600