Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 168 7e-37 seq16 136 4e-27 seq12 96.9 4e-15 seq14 82.4 8e-11 >seq1 Length=1352724 Score = 168 bits (186), Expect = 7e-37 Identities = 465/700 (66%), Gaps = 16/700 (2%) Strand=Plus/Minus Query 53276 ACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGC 53335 || ||||| |||||||| |||||||||| |||||| | || || | || ||| Sbjct 26293 ACCCACGCGTCGCCAACCTTGTTCAACGCCGGTACGCCGCGACCGCAACTCTCCTCGTGC 26234 Query 53336 TTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGT 53395 || || | |||||||| ||||| || || || |||||||| ||| | ||||| || Sbjct 26233 TTTTTGATTTGCATGAAGGAAGACTCCATTGAAGGTATCTACGACACGTTGAAGGAATGC 26174 Query 53396 GCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC-CACTGCTCGAACGTCCGTGCGAA 53454 || ||| ||||||| | || ||||| ||| | | | | ||| | |||| || | Sbjct 26173 GCGTGCATTTCCAAGTCCGCCGGCGGTATTGGTTTGTCTATTCACGA-CATCCGCGCCAC 26115 Query 53455 --CGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGC 53512 || | || || | || || ||||| | | | || ||| | || ||||| ||| Sbjct 26114 TTCGTCGTAC--ATTAGAGGCACAAACGGTACCTCGAACGGTATCATTCCGATGCTTCGC 26057 Query 53513 GTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTC 53572 || |||||| ||||||| ||||||| |||| || || || ||||||||||| | || Sbjct 26056 GTGTTCAACGACACGGCGAGGTACGTGGACCAAGGCGGCGGTAAGCGCAAGGGCGCTTTT 25997 Query 53573 GCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAAT 53632 ||||| |||||||| ||||||||| | ||||| | || | ||||| |||| ||| Sbjct 25996 GCCATTTACCTCGAACCGTGGCACTCTGACATCTTCGACTGGCTCGACTTGCGAAAGAAC 25937 Query 53633 CAGGGTGACGAAGA---GATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGAC 53689 || || | ||||| || | ||| |||||| ||||| | | |||||| || Sbjct 25936 CACGGGAAGGAAGAAGCGA-GAGCT--CGTGACTTGTTTTACGGTTTGTGGACGAACGAT 25880 Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGC 53749 | |||||| ||| || || | ||| ||||| | |||||||||||||||||| Sbjct 25879 TTGTTCATGAAAAGAGTCGAAGAAAACGGCAAGTGGACGTTAATGTGCCCGAACGAGTGC 25820 Query 53750 CCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGT 53808 || || | | | || || ||||| |||||| | | |||| | ||||| | Sbjct 25819 CCGGGTTTGTCCGAATG-CTGGGGTGAAGAGTTTGAAGCTTTGTACACCAAGTACGAAAA 25761 Query 53809 TCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGC-AATCCTCAAGA 53867 | | ||||||| | |||| || | || | ||| ||| | || | ||| Sbjct 25760 AGAAAACAAGGGTAAGAAGACGATCAACGCCCAGCAGCTTTGGTTTGCGATTCTTGAAGC 25701 Query 53868 GCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCA 53927 | || ||||| || || | |||||||||| | ||||||| || |||| ||| | Sbjct 25700 G-CAAGTGGAAACTGGTAACCCGTACATGTTGTTCAAGGATGCGTGCAACCGCAAGTCGA 25642 Query 53928 ACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 |||| | || | ||| ||||||||| |||||| || Sbjct 25641 ACCAACAAAATTTGGGCACGATCAAATCGTCCAACTTGTG 25602 >seq16 Length=955652 Score = 136 bits (150), Expect = 4e-27 Identities = 564/876 (64%), Gaps = 23/876 (3%) Strand=Plus/Minus Query 74470 CGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGA 74529 |||| || | ||| |||||||| | ||| |||| |||||| || |||||||||| |||| Sbjct 698307 CGACGCGATGTTCGAAAAAGTTCGCCTTGCCTTGCAACGAAATCGTCTCCATCCAATCGA 698248 Query 74530 AAGGGTTCTTTGCACCGTA-AATAGGCTT---CTCCCCAAACTGTGCCATGAGGCGATCC 74585 | || |||| || | || |||| ||| | | || ||||| | | | ||||| Sbjct 698247 ACGGATTCT--GCGCGTTATAATA--CTTACTCGCGCCCAACTGCACGAGCAAACGATCG 698192 Query 74586 GCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGC 74645 || ||||| | | ||| | | |||| | |||| |||||||| | ||| | Sbjct 698191 GCGACAAACTCGACGTAATCTGACATTAAATCTGCATTCATGCCGACTAACGCGCAGCTC 698132 Query 74646 AGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGA--CAATCTTGTGAA 74703 | || ||| || || || | || | | || | | ||||| |||||| ||| | Sbjct 698131 AACGCGTCGCAGACGAATTCTTTTTCGA--TTGCGACTGCGTTGGAGACAATCTCGTGCA 698074 Query 74704 TGTCTT--TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCAC-GGCAAACTCCT 74760 || | | | | || || | | ||| | || || ||| || | ||| || || Sbjct 698073 GCTCCTCCTCGCTGAGC--TTGTGCTTCAACTCGGAATACAGC-TCGCAGGCGAAATCGC 698017 Query 74761 GATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTC 74820 ||| | ||||| |||| || ||||| || || ||||||| | || ||| | || Sbjct 698016 AGTGCAACCCTTCGTCTCGACTGATCAACTCGTTGGAAAACGTCAAACCTTTCATCAATC 697957 Query 74821 CACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACAC 74880 | | |||||| | |||||||||||| ||||| || |||||||| |||||||| || | Sbjct 697956 CTCTCTTCTTTAGCCAAAAGATGGCGCAGAAACTGCCGCTGAAGAAAATGCCTTCCACGC 697897 Query 74881 ACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC---ATCCAAGTCTGAG 74937 | || || |||| | |||| || ||| || |||| | ||||| || | Sbjct 697896 ATGCGAAACCGACTAAACGTTCGGCAAACCTCGCCGACGAAGACTCGATCCATTTCATCG 697837 Query 74938 CCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCT 74997 |||| || || || ||| || | || | |||| |||||| | || | || || Sbjct 697836 CCCAATCCGCCTTCTTTTTCACGGTTGGAATCGTATGAATCGCTCGAAACAAATTTCTCT 697777 Query 74998 TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCG 75057 ||| || || || ||| | | || | || | | |||||| || ||||| Sbjct 697776 TCTGAATTGGGTCTTTCACGTACGTCTCTAACAACAACGCGTACGTTTCGCTGTGAATAT 697717 Query 75058 ACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTG 75117 |||| || | ||| ||||||| || | | |||||| | || ||| | || || Sbjct 697716 TCTCGATGGATTGCTGAAACGCGTAAAACGCTCTCGCCTCGGGAACCTGAATCTCTTTCA 697657 Query 75118 AAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTA 75177 ||| || | | |||||||| |||||| |||||||||||||||||||| |||| | Sbjct 697656 TAAACCGCACGCATAAATTCTCCAAGACGATACCGTCCGAGGCGGCGAAAAACGCCAAAA 697597 Query 75178 CCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCG 75237 | ||||||| || |||| | || | | || |||||| | || || Sbjct 697596 CGTGCGTGATAAAATGTTGCTCGTTCTCGTTCAACGTGATCCAATCTCTGTAATCGTACG 697537 Query 75238 CCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACA 75297 ||||||||||||||| | ||||| || ||| | ||| || || || | | || | Sbjct 697536 TCAAATCAATCTCCTCCGCGGTCCAAAAGCTCGCCTCCGCTTTCTTATA-ATACTCCCAA 697478 Query 75298 AGTC-AGGGTAATTGATTGGAAATGTCGTAAATCGG 75332 | || ||||| || || || || |||||||||| Sbjct 697477 ATTCTCGGGTATTTCATCGGGAACAACGTAAATCGG 697442 >seq12 Length=1122692 Score = 96.9 bits (106), Expect = 4e-15 Identities = 202/298 (68%), Gaps = 6/298 (2%) Strand=Plus/Plus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCAT---CCTTGCCACCTGCCAGCCGCGT 152078 ||||||||| || ||||| || | || | ||| | |||| || ||| || ||||| Sbjct 1064124 CAAACGCGTAAAAATGTAACGCG-GC--GACGCGTGGTCCTTCCCGCCTTGCAAACGCGT 1064180 Query 152079 TCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGC 152138 |||||||| || || | | | ||||| |||||| | || ||||||| ||||| Sbjct 1064181 ACCAAACTGACCGCTCGGGACTAACAAGTTGATGTTGTTCGTCCCAACGAAATCTTGAGC 1064240 Query 152139 CAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGC 152198 | ||| || || || | ||| |||||| ||||||||||| || | || |||| Sbjct 1064241 GAGATTAACGATTGTCGACGCAAGAGACGCTTCGCCGTGGTGATAGGCGGAGTGTTCCGA 1064300 Query 152199 GATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGC 152258 || ||| || ||| ||||| || || ||||||| | ||| || |||||| || | Sbjct 1064301 GACGTAACCGCTCAATTGCGCGACTTTGATGTCCGACTTCAACTTTCTCTTGAAGCACGA 1064360 Query 152259 GTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316 | || || || || || || || || ||||| || | || ||||| |||||| Sbjct 1064361 AAACATAACTTTTCGTTGCGAAGGCTTGAAACCATCAATGGCGGATGGAATAGAACGC 1064418 >seq14 Length=1037991 Score = 82.4 bits (90), Expect = 8e-11 Identities = 304/466 (65%), Gaps = 24/466 (5%) Strand=Plus/Plus Query 74455 ACTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGT 74514 ||||| || || ||||| || || ||||| ||||| ||||| |||| ||| || || Sbjct 65891 ACTTTTGGTACTCGCCGACACGTTTCTCAAAGAAGTTCGTCTTGCCTTGCAAAGAAATTA 65950 Query 74515 TCTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAA------CT 74568 |||||||||||||| |||||| | |||| || || | |||| || Sbjct 65951 ATTCCATCCAGTCGAACGGGTTCGCGGTGTCGTA------CTCCTTCGCAAAGCCGAGCT 66004 Query 74569 GTGCCATGAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGC 74628 | | | | | |||| || || | | ||||| | |||| | || | ||||| Sbjct 66005 GCGAGAGCAAGTGATCGGCAACGTACTCGATGTAATCTCTCATCATGTCGGCGTTCATGC 66064 Query 74629 CGATGAGTTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATT 74688 ||| ||| |||||||| || ||| | |||||| |||| | || || | | | Sbjct 66065 CGACGAGCGCGCACGGCAACGCGTCGCACACAAACTCCTTCTCAATTTC--AACCGCCTC 66122 Query 74689 GG--ACAATCTTG-TGAATGTCTT-TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC 74744 || |||||||| | || ||| | | ||| || ||| | ||||||| Sbjct 66123 GGTAACAATCTTTCTCAACTTCTCCTCGCCCGGCGTGTTGT--TCAACATCGTGTAAAGC 66180 Query 74745 GT-CACGGCAAACTC-CTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACG 74802 |||| |||| || ||| ||| | ||||| |||||| ||||| || || || || | Sbjct 66181 AAGCACG-CAAAATCTCTG-TGCAAACCTTCGTCTCTGGAGATCAACTCGTTGGAGAAGG 66238 Query 74803 AAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGA 74862 || || ||||| | || | |||||| | ||| |||| | ||||| || || || Sbjct 66239 TGAGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGATTGAGCAGAAAGAGCCGGAGA 66298 Query 74863 AGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 66299 AGAAGATGCCTTCGACGCAGGCGAACGCGACCAAACGTTCGGCGAA 66344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215856355800