Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12 120 2e-22 seq7 111 1e-19 seq16 104 1e-17 seq17 89.7 3e-13 >seq12 Length=1122692 Score = 120 bits (132), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||||| | |||||||||||| || | || || ||||| ||||| ||||| | Sbjct 916940 CGCCGCCTCGCAAACGCAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCG 916999 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || |||| | ||||||| | ||||||||||| || || || ||||| |||||||||| Sbjct 917000 CGAGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCG 917059 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | |||||||||||| ||| ||| | ||| ||| | || ||||| | ||| Sbjct 917060 GAATGCCCTCCTTGTCT-TGAATTTTCGCTTTCACGTTGTCGATCGTGTCCGAGGACTCG 917118 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTT 34691 ||||| | || || ||||| || || || ||||| Sbjct 917119 ACTTCGAGCGTGATGGTTTTCCCAGTCAAAGTTTT 917153 >seq7 Length=519835 Score = 111 bits (122), Expect = 1e-19 Identities = 151/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 |||||||| || || |||||||| || | ||| ||| ||||||||||||||||| | Sbjct 260359 CCGCCTCTCAGGCGTAACACCAAGTGTAACGTGGACTCTTTTTGAATGTTATAATCCGCC 260418 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || ||||||| | ||||| ||||| || || || ||||| ||||| || | Sbjct 260419 AAAGTG--CGTCCGTCTTCTAACTGTTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGAG 260476 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | || ||||||||| ||| ||| | || ||| | || ||||| | ||| Sbjct 260477 GGATGCCTTCCTTGTCTTGGAT-TTTCGCCTTGACGTTGTCGATGGTGTCCGAGGATTCC 260535 Query 34657 ACTTCCACGGTTATCGTTTTACCGGT 34682 ||||||| ||| |||||||| || || Sbjct 260536 ACTTCCAAGGTGATCGTTTTGCCCGT 260561 >seq16 Length=955652 Score = 104 bits (114), Expect = 1e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34474 TCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAA 34533 || |||||||||| | |||||||||||| || | || |||||| || ||||| ||| Sbjct 707280 TCTTCGCCGCCTCGTAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAA 707339 Query 34534 TCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCC 34593 || | | |||| ||||||| | || |||||||| || || || ||||| || ||| Sbjct 707340 TCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCC 707399 Query 34594 GGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT 34652 ||||| | || ||||||||| |||| || | || ||| | || ||||| Sbjct 707400 GGCGGGATACCTTCCTTGTCTTGGATC-TTCGCCTTGACGTTGTCGATGGTGTCGGAAGA 707458 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| ||||||| || || ||||| || || || || || || || || ||||| Sbjct 707459 CTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707512 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | |||||||||||| || | || |||||| || ||||| ||||| | Sbjct 707514 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707573 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| | || |||||||| || || || ||||| || |||||||| Sbjct 707574 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707633 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || | || ||| | || ||||| ||| || Sbjct 707634 ATACCTTCCTTGTCTTGGATC-TTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 707692 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || || || || || || || ||||| Sbjct 707693 TTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707740 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | |||||||||||| || | || |||||| || ||||| ||||| | Sbjct 707742 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707801 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| | || |||||||| || || || ||||| || |||||||| Sbjct 707802 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707861 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || | || ||| | || ||||| ||| || Sbjct 707862 ATACCTTCCTTGTCTTGGATC-TTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCAAC 707920 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || || || || || || || ||||| Sbjct 707921 TTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707968 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | |||||||||||| || | || |||||| || ||||| ||||| | Sbjct 707970 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 708029 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| | || |||||||| || || || ||||| || |||||||| Sbjct 708030 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGA 708089 Query 34600 ACTCC 34604 | ||| Sbjct 708090 ATTCC 708094 >seq17 Length=937610 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | | |||||| ||||| || | ||| || |||||||||||||| || | Sbjct 351324 GCCGCCGCGCAAACGCAAGACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCGGC 351383 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||| | ||||| | |||||| ||||| || || || ||||| || |||||||| Sbjct 351384 TAAAGTTCGGCCATCTTCTAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGCGG 351443 Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622 | ||||| |||||| ||| || Sbjct 351444 GATGCCCTCTTTGTCTTGGATTTT 351467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729519448893