Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq16 104 2e-17 seq17 100 2e-16 seq12 100 2e-16 >seq16 Length=955652 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | ||| ||| ||||| || || ||||| ||||| || || || || Sbjct 707419 GACAAGGAAGGTATCCCGCCGGATCAGCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAA 707360 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | ||| |||||||||||||||| || ||| || ||||| ||||| ||| Sbjct 707359 GACGGCAGAACGTTGGCCGATTACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGTTG 707300 Query 28003 CGTTTGCGTGGCGGCGACGA 28022 ||||| || |||||||| || Sbjct 707299 CGTTTACGAGGCGGCGAAGA 707280 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | ||| ||| ||||| || || ||||| ||||| || || || || Sbjct 707647 GACAAGGAAGGTATCCCGCCGGATCAGCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAA 707588 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | ||| |||||||||||||||| || ||| || ||||| ||||| ||| Sbjct 707587 GACGGCAGAACGTTGGCCGATTACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGTTG 707528 Query 28003 CGTTTGCGTGGCGG 28016 |||||| | ||||| Sbjct 707527 CGTTTGAGAGGCGG 707514 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | ||| ||| ||||| || || ||||| ||||| || || || || Sbjct 707875 GACAAGGAAGGTATCCCGCCGGATCAGCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAA 707816 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | ||| |||||||||||||||| || ||| || ||||| ||||| ||| Sbjct 707815 GACGGCAGAACGTTGGCCGATTACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGTTG 707756 Query 28003 CGTTTGCGTGGCGG 28016 |||||| | ||||| Sbjct 707755 CGTTTGAGAGGCGG 707742 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 27896 TTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCT 27955 ||||| ||| ||||| || || ||||| ||||| || || || || |||| | | | Sbjct 708090 TTCCGCCGGATCAGCAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGT 708031 Query 27956 TGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCG 28015 || |||||||||||||||| || ||| || ||||| ||||| ||||||||| | |||| Sbjct 708030 TGGCCGATTACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTGAGAGGCG 707971 Query 28016 G 28016 | Sbjct 707970 G 707970 >seq17 Length=937610 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || | ||| ||| ||||| || || || || |||||||||||||| || Sbjct 351458 GACAAAGAGGGCATCCCGCCGGATCAGCAGCGATTGATCTTCGCCGGAAAACAATTAGAA 351399 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | || |||| || ||||| |||||||| ||| ||||| ||||| ||| Sbjct 351398 GATGGCCGAACTTTAGCCGACTATAACATTCAAAAAGAATCCACCTTGCACTTGGTCTTG 351339 Query 28003 CGTTTGCGTGGCGGC 28017 |||||||| |||||| Sbjct 351338 CGTTTGCGCGGCGGC 351324 >seq12 Length=1122692 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 27805 AAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACCGAC--GATGTACAAT 27862 |||||| | ||||||||| || || | || ||||| | | ||| ||| |||| Sbjct 917153 AAAACTTTGACTGGGAAAACCATCACGCTCGAAGTCGAGTCCTCGGACACGATCGACAAC 917094 Query 27863 CGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTT 27922 || ||| ||||| ||||| || || ||||| ||| ||||| || || |||| Sbjct 917093 --GTGAAAGCGAAAATTCAAGACAAGGAGGGCATTCCGCCGGACCAGCAGCGATTGATTT 917036 Query 27923 TTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGA 27982 | ||||| ||||| || || |||| | | | | |||||||||||||||||||| Sbjct 917035 TCGCCGGTAAACAGTTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAAT 916976 Query 27983 GCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 || ||||| ||||| ||||||||||| ||||||| Sbjct 916975 CAACCTTGCACTTGGTGTTGCGTTTGCGAGGCGGCG 916940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862308921467