Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 141 2e-28 seq12 123 6e-23 seq16 113 1e-19 seq17 107 4e-18 >seq7 Length=519835 Score = 141 bits (156), Expect = 2e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 |||||||||||||| |||||||||||||| | || | ||| ||||| | ||| || || Sbjct 260389 GTGGACTCTTTTTGAATGTTATAATCCGCCAAAGTGCGTCCGTCTTCTAACTGTTTCCCG 260448 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | || || ||||||||||| | ||||||||||| ||||| || || Sbjct 260449 GCGAAGATCAACCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTCGCCTTG 260508 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||| ||||||||||| ||| ||| || || | |||||||| || ||||| Sbjct 260509 ACGTTGTCGATGGTGTCCGAGGATTCCACTTCCAAGGTGATCGTTTTGCCCGT 260561 >seq12 Length=1122692 Score = 123 bits (136), Expect = 6e-23 Identities = 139/185 (75%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||||||||| |||||||| || || || || ||||| | ||| || || Sbjct 916972 GTTGATTCTTTTTGGATGTTGTAATCCGCGAGAGTTCTCCCGTCTTCTAACTGTTTACCG 917031 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | || || ||||| || |||| || |||||||| || || || |||| Sbjct 917032 GCGAAAATCAATCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCTTGAATTTTCGCTTTC 917091 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| ||||| ||||| ||| || || ||||| ||||| || || || || | ||| Sbjct 917092 ACGTTGTCGATCGTGTCCGAGGACTCGACTTCGAGCGTGATGGTTTTCCCAGTCAAAGT- 917150 Query 211098 TTTAC 211102 ||||| Sbjct 917151 TTTAC 917155 >seq16 Length=955652 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| ||||| || | || || || ||||| | |||||| || Sbjct 707772 GTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCG 707831 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | || || || || || || | ||||||||||| |||||||| || Sbjct 707832 GCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTG 707891 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| ||||||||||| || ||||| || | ||||| || || || || | |||| Sbjct 707892 ACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAACGTGATGGTTTTGCCAGTCAAAGTC 707951 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 707952 TTGACGAAGATTTGCAT 707968 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| ||||| || | || || || ||||| | |||||| || Sbjct 707316 GTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCG 707375 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | || || || || || || | ||||||||||| |||||||| || Sbjct 707376 GCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTG 707435 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| ||||||||||| || || || || | ||||| || || || || | |||| Sbjct 707436 ACGTTGTCGATGGTGTCGGAAGACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTC 707495 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 707496 TTGACGAAGATTTGCAT 707512 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| ||||| || | || || || ||||| | |||||| || Sbjct 707544 GTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCG 707603 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | || || || || || || | ||||||||||| |||||||| || Sbjct 707604 GCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTG 707663 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| ||||||||||| || || || || | ||||| || || || || | |||| Sbjct 707664 ACGTTGTCGATGGTGTCGGAAGACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTC 707723 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 707724 TTGACGAAGATTTGCAT 707740 >seq17 Length=937610 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| | ||||| |||||||| |||||||| || || | || | |||||||| Sbjct 351342 GACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCGGCTAAAGTTCGGCCATCTTC 351401 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 | || || || |||||||| | || || || || || || | || || ||||| || Sbjct 351402 TAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGCGGGATGCCCTCTTTGTCTTG 351461 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || || ||||| ||||| ||||| || || || ||||| ||||||||||| Sbjct 351462 GATTTTCGCCTTGACGTTGTCGATAGTGTCCGAAGACTCGACTTCGAGGGTGATCGTCTT 351521 Query 211085 TCCCGTGAG 211093 |||||||| Sbjct 351522 GCCCGTGAG 351530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151688115665