Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq16 87.8 2e-12 seq12 84.2 2e-11 >seq7 Length=519835 Score = 109 bits (120), Expect = 5e-19 Identities = 155/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | |||||||||||| |||| |||| ||||||||| || |||||||| || Sbjct 260359 CCGCCTCTCAGGCGTAACACCAAGTGTAACGTGGACTCTTTTTGAATGTTATAATCCGCC 260418 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || ||| |||| || | |||||| || || || || | ||||||||||| | || Sbjct 260419 AAAGTGCGTCCGTCTTCTAACTGTTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGAGGG 260478 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || || ||||| ||||||| |||| ||| | | | || || || ||||| Sbjct 260479 ATGCCTTCCTTGTCTTGGATTTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGATTCCAC 260537 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 |||| ||||| |||| ||||||| | ||||| Sbjct 260538 TTCCAAGGTGATCGTTTTGCCCGTCA-CTTTTTA 260570 >seq16 Length=955652 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| ||| || |||||||| || | ||| ||| || || || || |||||||| Sbjct 707285 GCCGCCTCGTAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGC 707344 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 | |||| |||| || | ||| || || || || || | |||||||| || | || Sbjct 707345 CAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGG 707404 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCA 39235 | | || ||||| ||| ||| |||| ||| | | | || ||| ||||| | Sbjct 707405 GATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCGA 707463 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | |||| |||||| |||| || |||| || || || |||||||||||| Sbjct 707464 CTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCATC 707513 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || || |||||||| || | ||| ||| || || || || |||||||| Sbjct 707514 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707573 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | |||| |||| || | ||| || || || || || | |||||||| || | || Sbjct 707574 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707633 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236 | | || ||||| ||| ||| |||| ||| | | | || ||| ||||| || Sbjct 707634 ATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCGAC 707692 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| |||||| |||| || |||| || || || |||||||||||| Sbjct 707693 TTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCATC 707741 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || || |||||||| || | ||| ||| || || || || |||||||| Sbjct 707742 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707801 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | |||| |||| || | ||| || || || || || | |||||||| || | || Sbjct 707802 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707861 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236 | | || ||||| ||| ||| |||| ||| | | | || ||| ||||| || Sbjct 707862 ATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCAAC 707920 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| |||||| |||| || |||| || || || |||||||||||| Sbjct 707921 TTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCATC 707969 >seq12 Length=1122692 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| || || |||||||| || | || |||||||| || || ||||| || Sbjct 916941 GCCGCCTCGCAAACGCAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCGC 917000 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || |||| |||| || | |||||| || || || || | ||||||||||| | || Sbjct 917001 GAGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCGG 917060 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | || ||| ||||| |||||| ||| | ||| | | | ||| || ||||| | Sbjct 917061 AATGCCCTCCTTGTCTTGAATTTTCGCTTTCA-CGTTGTCGATCGTGTCCGAGGACTCGA 917119 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | || | |||||| |||| || |||| |||||| Sbjct 917120 CTTCGAGCGTGATGGTTTTCCCAGTCAAAGTTTTA 917154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545490063173