Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq16 161 2e-34 seq7 152 1e-31 seq12 147 5e-30 seq17 125 2e-23 seq20 113 1e-19 >seq16 Length=955652 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || |||| |||||||||||||| ||||| || ||||||| |||||| || Sbjct 707316 GTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCG 707375 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | ||| || || || ||||| ||||||||||||||||||||||| ||| Sbjct 707376 GCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTG 707435 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||||||||| || | || || || |||||||| || ||||| |||||||| Sbjct 707436 ACGTTGTCGATGGTGTCGGAAGACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTC 707495 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 707496 TTGACGAAGATTTGCAT 707512 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || |||| |||||||||||||| ||||| || ||||||| |||||| || Sbjct 707544 GTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCG 707603 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | ||| || || || ||||| ||||||||||||||||||||||| ||| Sbjct 707604 GCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTG 707663 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||||||||| || | || || || |||||||| || ||||| |||||||| Sbjct 707664 ACGTTGTCGATGGTGTCGGAAGACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTC 707723 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 707724 TTGACGAAGATTTGCAT 707740 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || |||| |||||||||||||| ||||| || ||||||| |||||| || Sbjct 707772 GTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCG 707831 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | ||| || || || ||||| ||||||||||||||||||||||| ||| Sbjct 707832 GCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTG 707891 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||||||||| || | || || || |||||||| || ||||| |||||||| Sbjct 707892 ACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAACGTGATGGTTTTGCCAGTCAAAGTC 707951 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 707952 TTGACGAAGATTTGCAT 707968 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || |||| |||||||||||||| ||||| || ||||||| |||||| || Sbjct 708000 GTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCG 708059 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||| || | ||| || || || |||||||| ||| Sbjct 708060 GCGAAAATCAATCGCTGCTGATCCGGCGGAATTCCT 708095 >seq7 Length=519835 Score = 152 bits (168), Expect = 1e-31 Identities = 147/188 (78%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||| |||||||| | || ||||| |||||||| | || ||||||| ||| ||||| Sbjct 260389 GTGGACTCTTTTTGAATGTTATAATCCGCCAAAGTGCGTCCGTCTTCTAACTGTTTCCCG 260448 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| | || || ||||| || || || ||||||||||||||||| || ||| Sbjct 260449 GCGAAGATCAACCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTCGCCTTG 260508 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||||||||| |||| |||||| || || |||||||| ||||||||| | || Sbjct 260509 ACGTTGTCGATGGTGTCCGAGGATTCCACTTCCAAGGTGATCGTTTTGCCCGTC--ACTT 260566 Query 225697 TTTATGAA 225704 ||||| || Sbjct 260567 TTTATAAA 260574 >seq12 Length=1122692 Score = 147 bits (162), Expect = 5e-30 Identities = 144/183 (79%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||||| |||||||| || | ||||||||| ||||||| ||| || || Sbjct 916972 GTTGATTCTTTTTGGATGTTGTAATCCGCGAGAGTTCTCCCGTCTTCTAACTGTTTACCG 917031 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | ||| || ||||| |||||||| || ||||||||||| || ||| || || Sbjct 917032 GCGAAAATCAATCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCTTGAAT-TTTCGCTTT 917090 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||||| ||||| |||| || || || | |||||| || || || |||||||| Sbjct 917091 CACGTTGTCGATCGTGTCCGAGGACTCGACTTCGAGCGTGATGGTTTTCCCAGTCAAAGT 917150 Query 225696 TTT 225698 ||| Sbjct 917151 TTT 917153 >seq17 Length=937610 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || ||| | ||| | |||||||||||||| | || || ||||| ||||||| ||||| Sbjct 351339 CAAGACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCGGCTAAAGTTCGGCCATC 351398 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||||| || || || |||||||| | ||| || || || ||||| || || || ||||| Sbjct 351399 TTCTAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGCGGGATGCCCTCTTTGTC 351458 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||| || ||| || ||||| ||||| || | || || || | |||||||| Sbjct 351459 TTGGATTTTCGCCTTGACGTTGTCGATAGTGTCCGAAGACTCGACTTCGAGGGTGATCGT 351518 Query 225681 CTTGCCCGT 225689 ||||||||| Sbjct 351519 CTTGCCCGT 351527 >seq20 Length=43614 Score = 113 bits (124), Expect = 1e-19 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || ||| |||||||| || | ||||| | || ||||||||||||| ||||||||| Sbjct 17349 TATGTCAAGGATTGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGCTCCACCGC 17408 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | || | |||||| || ||||| |||||| |||||||| |||||| | |||| || Sbjct 17409 TTGTGTAAGCCCCCGTCAATTCCTTTGGGTTTTAGCCTTGCGGCCGTAGTCCCCAGGCGG 17468 Query 7844 AATATTT-ACGCGTTAGCT 7861 |||| | ||||||||| Sbjct 17469 CTGATTTCATGCGTTAGCT 17487 Score = 113 bits (124), Expect = 1e-19 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || ||| |||||||| || | ||||| | || ||||||||||||| ||||||||| Sbjct 38093 TATGTCAAGGATTGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGCTCCACCGC 38034 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | || | |||||| || ||||| |||||| |||||||| |||||| | |||| || Sbjct 38033 TTGTGTAAGCCCCCGTCAATTCCTTTGGGTTTTAGCCTTGCGGCCGTAGTCCCCAGGCGG 37974 Query 7844 AATATTT-ACGCGTTAGCT 7861 |||| | ||||||||| Sbjct 37973 CTGATTTCATGCGTTAGCT 37955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530879134574