Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq21 787 0.0 seq15 100 3e-16 seq20 89.7 6e-13 >seq21 Length=72700 Score = 787 bits (872), Expect = 0.0 Identities = 774/994 (78%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTC 163978 |||| || || ||| ||| | |||||||| || || ||||| || |||| |||||| Sbjct 54075 TGGGGACGTTTTTGTTCATGGATCACTTCAACTGAGAACCGTTTATACATCGGATGGTTC 54016 Query 163979 GGCGTCCTGATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCA 164036 || || | ||||| |||| | | | |||| ||| | ||| |||||| | || |||| Sbjct 54015 GGTGTATTAATGAT-CCCTACATTATTAACAGCTACTTC-TGTATTCATCGTAGCATTCA 53958 Query 164037 TCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGT 164096 ||| |||||||| |||||||||||||| || || || || || |||| || || |||| Sbjct 53957 TCGCAGCTCCTCCAGTGGACATCGATGGTATTCGTGAGCCAGTATCTGGATCACTTATGT 53898 Query 164097 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 164156 | |||||||||||||||||||||||||| | ||| | || ||||||||||| || |||| Sbjct 53897 ACGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACATCAAACGCTATCGGACTTCACT 53838 Query 164157 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 164216 ||||||| |||||||||||||| | || || || ||||| ||||||||||| |||| || Sbjct 53837 TCTACCCAATCTGGGAAGCAGCTACACTTGATGAGTGGCTTTACAACGGTGGACCTTACC 53778 Query 164217 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAAC 164276 | || | || | |||||| | || || | | | | |||||||||||||||||||| | Sbjct 53777 AGCTTATCGTATGTCACTTCTTCATCGGAGTATGTTCATACATGGGTCGTGAGTGGGAGC 53718 Query 164277 TTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTG 164336 |||| | |||| | || |||||||||||||| ||||| |||||||||||||| || | Sbjct 53717 TTTCATTCCGTTTAGGAATGCGTCCTTGGATCGCTGTAGCTTACTCTGCTCCTGTAGCAG 53658 Query 164337 CAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGC 164396 | || | |||||| ||| | | || || |||| || || ||||||||||| | |||| Sbjct 53657 CTGCAACTGCAGTATTCATCATTTACCCAATCGGACAGGGATCTTTCTCTGACGGTATGC 53598 Query 164397 CTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCC 164456 |||| || || |||||||| ||||||| |||| | || |||||||||||||||||||||| Sbjct 53597 CTCTTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCC 53538 Query 164457 TCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTG 164516 | |||||||| ||||| ||||| || ||||| ||||| || || ||||| || ||| || Sbjct 53537 TTATGCACCCATTCCACATGCTTGGAGTAGCTGGTGTATTCGGTGGTTCACTTTTCTCTG 53478 Query 164517 CAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCC 164576 | ||||||||||| || || |||||||| || | ||||| || || || || || || Sbjct 53477 CTATGCACGGTTCACTCGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAG 53418 Query 164577 AGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACG 164636 ||| || |||||||| || || |||||||| || |||||||| || || ||||||| Sbjct 53417 CTAACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTAGCTGCTCACG 53358 Query 164637 GTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACT 164696 ||||||| || ||||| || |||||||||||||| ||||||||||| ||||| || |||| Sbjct 53357 GTTACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACT 53298 Query 164697 TCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCA 164756 |||||||||| |||||||| | || |||||||| || ||||| || || || | Sbjct 53297 TCTTCCTCGCTATCTGGCCTGTAATGGGAATCTGGTTCACAGCTCTTGGTATTTCTACTA 53238 Query 164757 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTG 164816 |||| |||||||| ||||| ||||||||||||||||| | | ||| | || |||| Sbjct 53237 TGGCTTTCAACCTTAACGGATTCAACTTCAACCAGTCAGTGGTAGATTCAAACGGACGTG 53178 Query 164817 TGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACG 164876 || ||||||| ||||| || || | ||||||||| || || |||||||| ||||||| Sbjct 53177 TGATCAACACATGGGCTGATATTGTAAACCGTGCTAACCTTGGTATGGAAGTAATGCACG 53118 Query 164877 AGCGTAATGCTCACAACTTCCCTCTCGACCTTGC 164910 ||||||| |||||||||||||| || ||||| || Sbjct 53117 AGCGTAACGCTCACAACTTCCCACTTGACCTCGC 53084 Score = 627 bits (694), Expect = 1e-174 Identities = 757/1025 (74%), Gaps = 4/1025 (0%) Strand=Plus/Minus Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206 ||||||||||| | | || ||||||||||| | ||||||||||| || || || ||| Sbjct 62488 GGTTGGTTCGACAACGTAGATGACTGGCTTAAGCGTGACCGTTTCGTATTCGTAGGTTGG 62429 Query 165207 TCTGGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 165265 ||||||||| || || |||||| ||| || |||| ||||| || ||||||||||| || Sbjct 62428 TCTGGACTT-TTATTATTCCCATGTGCATACTTTGCACTTGGTGGATGGCTTACTGGAAC 62370 Query 165266 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGA-GGGTGCAA 165324 || ||||| || ||||| || ||||| | || ||||| || ||||| ||||| || Sbjct 62369 AACATTCGTAACTTCATGGTACACACACGGTTTAGCAAGTTCATACCTTGAAGGGTGTAA 62310 Query 165325 ACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTC 165384 ||| || ||| | ||||| || || ||| || |||| |||| || || ||||| || | Sbjct 62309 -CTTCCTCACTTCAGCAGTATCAACGCCATCAAACGCGATGGCACACTCACTTCTTCTCC 62251 Query 165385 TATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGA 165444 | ||||| || || | ||||| ||||||| || ||||| |||||||| ||| | |||| Sbjct 62250 TTTGGGGACCAGAAGCACAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGATTATGGA 62191 Query 165445 CTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAAC 165504 | || || || || |||||||| |||| | | || || || |||||||| || |||||| Sbjct 62190 CATTCGTAGCTCTTCACGGAGCATTTGGATTAATCGGATTTATGCTTCGTCAATTTGAAA 62131 Query 165505 TGGCACGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG 165564 | || || | |||||||| ||||| || ||||| ||||| | || ||||||| Sbjct 62130 TTGCTCGTGCAGTACAAATTCGTCCATACAACGCGATTGCATTCTCAGCACCAATTGCTG 62071 Query 165565 TATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGT 165624 | || || ||| || ||||| || || || || ||||| |||||||| ||||| | Sbjct 62070 TGTTTGTATCTGTATTCCTTATTTACCCACTTGGGCAATCAGGTTGGTTCTTTGCACCAT 62011 Query 165625 CGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGA 165684 | || || || || | ||| ||||| || | || ||| ||||||| ||||| ||||||| Sbjct 62010 CATTTGGTGTAGCTGGAATTTTCCGTTTTATTCTTTTCTTCCAAGGTTTCCACAACTGGA 61951 Query 165685 CGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTG 165744 | || || || || ||||||||||| ||||| ||| | | || | |||| | |||| || Sbjct 61950 CACTTAACCCATTCCACATGATGGGAGTAGCTGGTGTACTCGGTGCAGCACTTCTTTGTG 61891 Query 165745 CCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTT 165804 | ||||| || | || |||||||| || | | ||||||||||| ||||||| | Sbjct 61890 CAATTCACGGAGCAACTGTAGAGAACACACTTTTCGAAGATGGTGATGGTTCAAACACAT 61831 Query 165805 TCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTT 165864 || ||||| | ||||| | ||| || ||||| || ||||| || |||||||||| Sbjct 61830 TCCGTGCATTCAACCCAACTCAAGCAGAAGAGACTTACTCAATGGTAACGGCTAACCGTT 61771 Query 165865 TCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGC 165924 ||||||| |||||||| ||| | |||||| || |||||||||||||||||||| |||| Sbjct 61770 TCTGGTCACAGATTTTCGGTGTAGCTTTCTCAAACAAGCGTTGGCTTCACTTCTTCATGC 61711 Query 165925 TCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCA 165984 |||| || ||||| | || | |||| | |||| | | || | ||||| | Sbjct 61710 TCTTCGTACCTGTTACTGGGTTATGGATGTCAGCACTTGGAGTAGTAGGATTAGCACTTA 61651 Query 165985 ATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTG 166044 | || ||||| || || || || || || ||||| | ||||| || ||||| ||||| | Sbjct 61650 ACCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTGCTGCAGAAGATCCTGAGTTCG 61591 Query 166045 AAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTG 166104 |||| ||||| ||||| ||||| || ||||| |||||| ||||||| ||| |||| || Sbjct 61590 AAACATTCTACACGAAGAACATTCTTCTTAACGAAGGAATCCGTGCATGGATGGCAGCTC 61531 Query 166105 TAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCAC 166164 ||| || |||||||| ||| |||| |||||||| || || | ||| | || ||||| | Sbjct 61530 AAGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTC 61471 Query 166165 TTTAA 166169 ||||| Sbjct 61470 TTTAA 61466 >seq15 Length=989707 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 161546 GACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGT 161605 |||||| ||| |||| ||||| ||||| ||||| || | ||| | ||||| || Sbjct 286960 GACGACACCTACGTTCTCGACGCGGCTGAAGAAGCTGGCATTGACTTGCCGTACTCCTGC 287019 Query 161606 CGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 161665 | || ||||| || || ||||||||||| || | ||| | || ||| | |||||| | Sbjct 287020 AGAGCGGGCGCGTGCTCTTCGTGCGCGGGTAAGGTTGTCGCGGGTACCATCGACCAATCC 287079 Query 161666 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 161725 ||||| |||||| ||||||| ||||||| || | || || | ||||||| ||| | Sbjct 287080 GACCAATCCTTCTTGGACGACGACCAAACCGGTAACGGCTTTGTGTTGACTTGCGTTGCG 287139 Query 161726 TATCCCAC 161733 || || || Sbjct 287140 TACCCGAC 287147 >seq20 Length=43614 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 159830 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 159888 |||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||| Sbjct 33397 TAGCTCAGTTGGATAGAGCACCAGCCTTCTAAGCTGTTGGTCACAGGTTCGAGTCCTGT 33455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557654253615720