Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq21 830 0.0 >seq21 Length=72700 Score = 830 bits (920), Expect = 0.0 Identities = 784/995 (79%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 |||| || || ||| ||| | || || || | || ||| | || |||| |||||| Sbjct 54075 TGGGGACGTTTTTGTTCATGGATCACTTCAACTGAGAACCGTTTATACATCGGATGGTTC 54016 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGT 177707 ||||| | ||||||||||| | | | ||| || ||||| |||||||| || ||| | Sbjct 54015 GGTGTATTAATGATCCCTACATTATTAACAGCTACT-TCTGTATTCATCGTAGCATTCAT 53957 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 ||| |||||||| ||||||||||| || || ||||| || || |||| || || ||||| Sbjct 53956 CGCAGCTCCTCCAGTGGACATCGATGGTATTCGTGAGCCAGTATCTGGATCACTTATGTA 53897 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTT 177827 || ||||||||||| ||||||||||| |||||| | || |||||||| || || ||||| Sbjct 53896 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACATCAAACGCTATCGGACTTCACTT 53837 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 ||| || ||||||||||||||| | || ||||||||||| ||||| ||||| |||| ||| Sbjct 53836 CTACCCAATCTGGGAAGCAGCTACACTTGATGAGTGGCTTTACAACGGTGGACCTTACCA 53777 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 177947 || | | | |||||| | ||||| | | | |||||||||||||||||||||| || Sbjct 53776 GCTTATCGTATGTCACTTCTTCATCGGAGTATGTTCATACATGGGTCGTGAGTGGGAGCT 53717 Query 177948 TTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGC 178007 ||| | ||| |||| |||||||| |||||| |||||| ||||||||||| || || || Sbjct 53716 TTCATTCCGTTTAGGAATGCGTCCTTGGATCGCTGTAGCTTACTCTGCTCCTGTAGCAGC 53657 Query 178008 AGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCC 178067 ||| |||| |||||| | |||| || |||| || || ||||||||||||| |||||| Sbjct 53656 TGCAACTGCAGTATTCATCATTTACCCAATCGGACAGGGATCTTTCTCTGACGGTATGCC 53597 Query 178068 CCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 178127 || ||||| ||| || ||||||| |||| | || ||||| || |||||||||||||| Sbjct 53596 TCTTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCT 53537 Query 178128 GATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGC 178187 |||||||| ||||||||| | || || |||||||| || |||||||| || ||| ||| Sbjct 53536 TATGCACCCATTCCACATGCTTGGAGTAGCTGGTGTATTCGGTGGTTCACTTTTCTCTGC 53477 Query 178188 GATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCA 178247 ||||||||||| || || ||||| || || | |||||||| || ||||||||| ||| Sbjct 53476 TATGCACGGTTCACTCGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAA--TCA 53419 Query 178248 G--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCAT 178305 | ||| || ||||||||||| |||||||||||||| |||||||| || |||||||| Sbjct 53418 GCTAACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAC 53359 Query 178306 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCAC 178365 ||||||||||| || || |||||||||||||| || ||||||||||| ||||| || ||| Sbjct 53358 GGTTACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCAC 53299 Query 178366 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 178425 ||||||||||| |||||||| | || ||||||||||| ||||||||| || || Sbjct 53298 TTCTTCCTCGCTATCTGGCCTGTAATGGGAATCTGGTTCACAGCTCTTGGTATTTCTACT 53239 Query 178426 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAA 178485 ||||| |||||||| ||||| ||||||||||||||||| | | ||| | || Sbjct 53238 ATGGCTTTCAACCTTAACGGATTCAACTTCAACCAGTCAGTGGTAGATTCAAACGGACGT 53179 Query 178486 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCAC 178545 || | ||||| ||||| || || | ||||||||| |||||||||||||| |||||| Sbjct 53178 GTGATCAACACATGGGCTGATATTGTAAACCGTGCTAACCTTGGTATGGAAGTAATGCAC 53119 Query 178546 GAGCGTAATGCTCACAACTTCCCTCTTGACCTCGC 178580 |||||||| |||||||||||||| ||||||||||| Sbjct 53118 GAGCGTAACGCTCACAACTTCCCACTTGACCTCGC 53084 Score = 659 bits (730), Expect = 0.0 Identities = 751/1003 (75%), Gaps = 4/1003 (0%) Strand=Plus/Minus Query 178851 GATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTC 178910 |||||||||||||||||||| || ||||| || || |||||||| || ||| | | ||| Sbjct 62470 GATGACTGGCTTAAGCGTGACCGTTTCGTATTCGTAGGTTGGTCTGGACTTTTATTATTC 62411 Query 178911 CCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGG 178970 || ||| ||| | ||||| || || ||||| || || ||||||||||| || || ||| Sbjct 62410 CCATGTGCATACTTTGCACTTGGTGGATGGCTTACTGGAACAACATTCGTAACTTCATGG 62351 Query 178971 TATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTA 179030 || || ||||| | || ||| || ||||| || ||||| ||||| ||| | || ||| Sbjct 62350 TACACACACGGTTTAGCAAGTTCATACCTTGAAGGGTGTAACTTCCTCACTTCAGCAGTA 62291 Query 179031 TCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAG 179090 ||||| || | |||| | | ||| || || ||||| || ||||| |||||||| || Sbjct 62290 TCAACGCCATCAAACGCGATGGCACACTCACTTCTTCTCCTTTGGGGACCAGAAGCACAA 62231 Query 179091 GGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGT 179150 || || ||| || ||| |||||||| ||| ||||| | || || || || ||||| Sbjct 62230 GGTGACTTCACACGTTGGTGTCAACTTGGTGGATTATGGACATTCGTAGCTCTTCACGGA 62171 Query 179151 GCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATT 179210 || || | | || || || |||||||| || |||||||| || ||| ||| ||| Sbjct 62170 GCATTTGGATTAATCGGATTTATGCTTCGTCAATTTGAAATTGCTCGTGCAGTACAAATT 62111 Query 179211 CGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTC 179270 ||||| ||||| || || || || || | ||||||||||| ||||| ||||| || || Sbjct 62110 CGTCCATACAACGCGATTGCATTCTCAGCACCAATTGCTGTGTTTGTATCTGTATTCCTT 62051 Query 179271 ATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATT 179330 || || || || || || || ||||||||||| || || ||||| || || | ||| Sbjct 62050 ATTTACCCACTTGGGCAATCAGGTTGGTTCTTTGCACCATCATTTGGTGTAGCTGGAATT 61991 Query 179331 TTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATG 179390 ||||| || | || ||| | || || |||||||||||||| || ||||| ||||||||| Sbjct 61990 TTCCGTTTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATG 61931 Query 179391 ATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTA 179450 ||||| ||||| ||| | || || | |||| | |||||||| ||||| || || || ||| Sbjct 61930 ATGGGAGTAGCTGGTGTACTCGGTGCAGCACTTCTTTGTGCAATTCACGGAGCAACTGTA 61871 Query 179451 GAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACA 179510 ||||||||||| || ||||| |||| ||||| |||||| |||||| | || || Sbjct 61870 GAGAACACACTTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCATTCAACCCAACT 61811 Query 179511 CAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGT 179570 |||| ||| ||||| || || ||||| || || |||||||||||||| ||||| || ||| Sbjct 61810 CAAGCAGAAGAGACTTACTCAATGGTAACGGCTAACCGTTTCTGGTCACAGATTTTCGGT 61751 Query 179571 ATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCA-TGGG 179629 | || ||| || ||||||||||| || ||||| ||| | || || ||||| | |||| Sbjct 61750 GTAGCTTTCTCAAACAAGCGTTGGCTTCACTTCTTCATGCTCTTCGTACCTGTTACTGGG 61691 Query 179630 TCTTTGGACCTCTAGCA-TTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACT 179688 | | |||| || |||| |||| | | || | ||||||||||| | || || |||| Sbjct 61690 T-TATGGATGTC-AGCACTTGGAGTAGTAGGATTAGCACTTAACCTCCGTGCATACGACT 61633 Query 179689 TTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGA 179748 | || |||||||||||| | || ||||| |||||||||||||| || ||||| || |||| Sbjct 61632 TCGTATCACAAGAGATCCGTGCTGCAGAAGATCCTGAGTTCGAAACATTCTACACGAAGA 61573 Query 179749 ACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACATGAAA 179808 |||| || | || ||||| | ||||| ||||||||| | ||||| || ||||||| Sbjct 61572 ACATTCTTCTTAACGAAGGAATCCGTGCATGGATGGCAGCTCAAGATCAGCCTCATGAAA 61513 Query 179809 ACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || ||||||| ||||| || ||| | ||| | || |||||||| Sbjct 61512 ACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTCT 61470 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 18369 GGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGGG 18428 |||| | || ||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 44444 GGGTCGATGCCCGAGTGGTTAATGGGGGCGGACTGTAAATCCGCTGGCTTTGCCTACACT 44385 Query 18429 GGTTCAAATCC 18439 ||||||||||| Sbjct 44384 GGTTCAAATCC 44374 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 17857 CAGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 |||||| ||||||||||||||||||||| ||||||||| || ||||||||||||| Sbjct 57549 CAGGGGGTTTAGCTCAGTTGGTAGAGCGCTGCCTTTGCAAGGCAGACGTCAGCGGTTCGA 57490 Query 17917 GTCCGCTATTCTCCA 17931 ||||||| ||||| Sbjct 57489 GTCCGCTTACCTCCA 57475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596307043469360