Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq17 168 1e-36 seq12 167 5e-36 seq7 154 3e-32 seq16 147 5e-30 >seq17 Length=937610 Score = 168 bits (186), Expect = 1e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||| || | |||| || || ||| ||||||||| ||||| ||||| || Sbjct 351325 CCGCCGCGCAAACGCAAGACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCGGCT 351384 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || |||||||| |||| |||||| ||||| |||||||| || || || || ||| Sbjct 351385 AAAGTTCGGCCATCTTCTAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGCGGG 351444 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| ||||||||||| || || || ||| | |||||||||||||||| |||||| Sbjct 351445 ATGCCCTCTTTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTGTCCGAAGACTCGACT 351504 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||||||||| ||||| Sbjct 351505 TCGAGGGTGATCGTCTTGCCCGT 351527 Score = 136 bits (150), Expect = 8e-27 Identities = 279/410 (68%), Gaps = 10/410 (2%) Strand=Plus/Minus Query 43979 TTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAA 44038 ||| |||||||||||| || ||||||||||| || || || |||||||| || | |||| Sbjct 352902 TTTACCAAGCGTCGACGTCCGAGTTGTACGGTAAAGTGCAAGAGATTCCGCAGTCCGAAA 352843 Query 44039 GGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGG--AT 44096 ||| |||||||| || || || || | || ||||| | | |||||| Sbjct 352842 CGACGCCGTTTTACCCGCGATCGCCGTACGCGGTCGCGAAATTGATGGGGTATTGGGCCG 352783 Query 44097 TTGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCA 44156 |||| ||| || | |||||||| | ||||||| || || ||||| ||||| || Sbjct 352782 TTGT--AAACTACAGAGAGTCGTACGATATGTTCGCGTGCAACGGGATTTTGTTCAACCA 352725 Query 44157 CGAAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAA 44216 |||| || | ||||| | ||||| || | ||||| || || || ||||| Sbjct 352724 CGAATCGCCGAGAAGAGGGGAAACTTTCGTCACCAGAAAAATTACTTTGGCCGTGGCGAA 352665 Query 44217 TATTTTCAA--CGGGACA-GAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGA 44273 | |||| ||||| | |||||||| ||||| | || ||| | ||| | ||||||| Sbjct 352664 CA---TCAAGGCGGGAAACCAAAAATGCTTGTATTTGGGTAACTTGGACGCGCAAAGAGA 352608 Query 44274 TTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTC 44333 ||||||| | || ||||| || || ||||||| || || ||||||||| | Sbjct 352607 TTGGGGACACGCGAGAGATTACGTCGAGTGCATGTGGAAAATATTACAACAAGACGTACC 352548 Query 44334 AGACGACTACGTTATTGCAACTGGAAAGACGACGAGTGTCCGTGACTTTG 44383 || || ||||| | || ||||| ||| ||| | || || || |||| Sbjct 352547 GGAAGATTACGTGGTCGCGACTGGCGAGATGACCACCGTTCGCGAGTTTG 352498 >seq12 Length=1122692 Score = 167 bits (184), Expect = 5e-36 Identities = 209/284 (74%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 ||| |||||||| | | ||| |||||||| || ||||||| | || ||||||||| Sbjct 1064130 CGTAAAAATGTAACGCGGCGACGCGTGGTCCTTCCCGCCTTGCAAACGCGTACCAAACTG 1064189 Query 273839 ACC-CTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCA 273897 ||| |||||| | || | |||| |||||||| | || ||| |||| ||||| | ||| | Sbjct 1064190 ACCGCTCGGG-ACTAACAAGTTGATGTTGTTCGTCCCAACGAAATCTTGAGCGAGATTAA 1064248 Query 273898 CGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAAC 273957 |||| ||| | ||| || | |||||||||||||||||| |||||| | || |||| Sbjct 1064249 CGATTGTCGACGCAAGAGACGCTTCGCCGTGGTGATAGGCGGAGTGTTCCGAGACGTAAC 1064308 Query 273958 CACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACA 274017 | || || || || || || | || | |||| |||| |||||| ||| ||| | Sbjct 1064309 CGCTCAATTGCGCGACTTTGATGTCCGACTTCAACTTTCTCTTGAAGCACGAAAACATAA 1064368 Query 274018 CCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATA 274061 | || || ||||| |||||||| ||||||| | | ||||||||| Sbjct 1064369 CTTTTCGTTGCGAAGGCTTGAAACCATCAATGGCGGATGGAATA 1064412 Score = 154 bits (170), Expect = 3e-32 Identities = 141/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||||||||||||| || || || || | || || |||| ||||| ||||| || Sbjct 916977 TTCTTTTTGGATGTTGTAATCCGCGAGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAA 917036 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| || || ||||| |||||| |||||||||||||| || || ||||| ||| | Sbjct 917037 AATCAATCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCTTGAATTTTCGCTTTCACGTT 917096 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 ||||| |||||||| | ||||||||||| ||||| || || || |||||||| ||| Sbjct 917097 GTCGATCGTGTCCGAGGACTCGACTTCGAGCGTGATGGTTTTCCCAGTCAAAGTTTTA 917154 >seq7 Length=519835 Score = 154 bits (170), Expect = 3e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | |||||| | |||| ||||||||| |||||||| ||||| || || || Sbjct 260359 CCGCCTCTCAGGCGTAACACCAAGTGTAACGTGGACTCTTTTTGAATGTTATAATCCGCC 260418 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| || || |||| ||||||||||| |||||||| || || |||||| || Sbjct 260419 AAAGTGCGTCCGTCTTCTAACTGTTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGAGGG 260478 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||||||||| || || || ||| | ||||| |||||||| | ||| ||| Sbjct 260479 ATGCCTTCCTTGTCTTGGATTTTCGCCTTGACGTTGTCGATGGTGTCCGAGGATTCCACT 260538 Query 283053 TCGAGAGTGATCGTCTTACCCGTCA 283077 || | |||||||| || ||||||| Sbjct 260539 TCCAAGGTGATCGTTTTGCCCGTCA 260563 >seq16 Length=955652 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || ||||| || || ||||||||||| || || | ||| | ||| || ||| Sbjct 707304 ACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCT 707363 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | || || ||||| || ||||| || || || || ||| ||||| |||||||||||| Sbjct 707364 AACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGG 707423 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || ||| | ||||| ||||| |||| |||||||| | ||||| || || Sbjct 707424 ATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACTTCCAACGTGATGGTTTTG 707483 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| || ||||| Sbjct 707484 CCAGTCAAAGTCTTGACGAAGATTTGCAT 707512 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || ||||| || || ||||||||||| || || | ||| | ||| || ||| Sbjct 707532 ACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCT 707591 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | || || ||||| || ||||| || || || || ||| ||||| |||||||||||| Sbjct 707592 AACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGG 707651 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || ||| | ||||| ||||| |||| |||||||| | ||||| || || Sbjct 707652 ATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACTTCCAACGTGATGGTTTTG 707711 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| || ||||| Sbjct 707712 CCAGTCAAAGTCTTGACGAAGATTTGCAT 707740 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || ||||| || || ||||||||||| || || | ||| | ||| || ||| Sbjct 707760 ACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCT 707819 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | || || ||||| || ||||| || || || || ||| ||||| |||||||||||| Sbjct 707820 AACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGG 707879 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || ||| | ||||| ||||| |||| || ||||| | ||||| || || Sbjct 707880 ATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAACGTGATGGTTTTG 707939 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| || ||||| Sbjct 707940 CCAGTCAAAGTCTTGACGAAGATTTGCAT 707968 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||| || || ||||||||||| ||||| ||| ||||||| || ||||||| || |||| Sbjct 708679 TACCTTCTTTATCTTGGATCTTCGCTTTCACGTTATCGATGGTATCCGAAGACTCCACTT 708738 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | | ||||| || || |||||||| || || ||||| || ||||| ||| Sbjct 708739 CCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAAATTTGCATCTTC 708788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738918361734