Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 156 1e-32 seq7 150 4e-31 seq17 149 2e-30 seq16 132 1e-25 >seq12 Length=1122692 Score = 156 bits (172), Expect = 1e-32 Identities = 151/193 (78%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAAC 177995 |||||| | || || ||||| ||||| ||||| || || ||| ||||| ||||| ||| Sbjct 917153 AAAACTTTGACTGGGAAAACCATCACGCTCGAAGTCGAGTCCTCGGACACGATCGACAAC 917094 Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 || ||| || ||||| ||||| || || || || ||||||||||| ||| | || ||| Sbjct 917093 GTGAAAGCGAAAATTCAAGACAAGGAGGGCATTCCGCCGGACCAGCAGCGATTGATTTTC 917034 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCA 178115 ||||| |||||| | ||||| || || ||||| || ||||| ||| |||||||||||||| Sbjct 917033 GCCGGTAAACAGTTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAATCA 916974 Query 178116 ACACTGCATCTTG 178128 || |||| |||| Sbjct 916973 ACCTTGCA-CTTG 916962 >seq7 Length=519835 Score = 150 bits (166), Expect = 4e-31 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || |||||||||||| | || |||||| ||| ||||||||||| |||||||| Sbjct 260561 ACGGGCAAAACGATCACCTTGGAAGTGGAATCCTCGGACACCATCGACAACGTCAAGGCG 260502 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || || || ||||| ||||| |||||||| |||||||| || | ||||||||||| ||| Sbjct 260501 AAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCGGTTGATCTTCGCCGGGAAA 260442 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 ||| | ||||| ||| | ||| | || ||||||||| | |||||||| || || Sbjct 260441 CAGTTAGAAGACGGACGCACTTTGGCGGATTATAACATTCAAAAAGAGTCCAC 260389 >seq17 Length=937610 Score = 149 bits (164), Expect = 2e-30 Identities = 146/187 (78%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || |||||||||||||| || || || ||||| ||||| |||||||| Sbjct 351530 CTCACGGGCAAGACGATCACCCTCGAAGTCGAGTCTTCGGACACTATCGACAACGTCAAG 351471 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || || || |||||||| || ||||| ||||| ||||| ||| | |||||||||||| Sbjct 351470 GCGAAAATCCAAGACAAAGAGGGCATCCCGCCGGATCAGCAGCGATTGATCTTCGCCGGA 351411 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| | |||||||| | ||| | ||||| |||||| | ||||||||||| || || Sbjct 351410 AAACAATTAGAAGATGGCCGAACTTTAGCCGACTATAACATTCAAAAAGAATCCACCTTG 351351 Query 178122 CATCTTG 178128 || |||| Sbjct 351350 CA-CTTG 351345 >seq16 Length=955652 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || ||||| ||||| | || || || || ||| Sbjct 707509 CAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCCGAC 707450 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 707449 ACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAGCAG 707390 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| || ||| | ||||| || || || | |||||||| ||| || Sbjct 707389 CGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAACATC 707330 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 707329 CAGAAGGAGTCTACGTTGCA-CTTG 707306 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || ||||| ||||| | || || || || ||| Sbjct 707737 CAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCCGAC 707678 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 707677 ACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAGCAG 707618 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| || ||| | ||||| || || || | |||||||| ||| || Sbjct 707617 CGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAACATC 707558 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 707557 CAGAAGGAGTCTACGTTGCA-CTTG 707534 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || ||||| ||||| | || || || || ||| Sbjct 707965 CAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTTGAGTCTTCCGAC 707906 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 707905 ACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAGCAG 707846 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| || ||| | ||||| || || || | |||||||| ||| || Sbjct 707845 CGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAACATC 707786 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 707785 CAGAAGGAGTCTACGTTGCA-CTTG 707762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730876121074