Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq51 114 3e-20 seq70 95.1 3e-14 >seq51 Length=33875 Score = 114 bits (126), Expect = 3e-20 Identities = 184/262 (70%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 281762 CGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTT 281821 ||| ||||| || || || |||| | || ||||| ||||| ||| | ||| |||| Sbjct 7033 CGCATGGTCCTTCCCGCCTTGCAAACGCGTACCAAATTGACCGCTCGGGACTAACAAGTT 6974 Query 281822 AATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATAC 281881 ||||| || |||| ||| | || || || || ||||| ||||| | || || | Sbjct 6973 TATGTTGTTCGTCCCAACGAAGTCTTGCGCGAGATTGACAATTGTGGACGCGAGAGACGC 6914 Query 281882 CTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCAC 281941 ||||||||||||||||| ||||| | || ||||| || || || || || || | Sbjct 6913 TTCACCGTGGTGATAGGCTGAATGTTCCGAGACGTAACCGCTCAATTGCGCAACTTTGAT 6854 Query 281942 GTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATA-CTTTTCGTTGAGAAGGCTTGA 282000 |||||| | || || | ||||| || | | | ||| |||||||||| ||||| |||| Sbjct 6853 GTCTGACTTTAACTTTCTCTTGAA-GCACGAAAACATAACTTTTCGTTGCGAAGGTTTGA 6795 Query 282001 AACCATCAACGACAGACGGAAT 282022 | ||||| | | | || ||||| Sbjct 6794 AGCCATCGATGGCGGATGGAAT 6773 Score = 87.8 bits (96), Expect = 4e-12 Identities = 330/505 (65%), Gaps = 32/505 (6%) Strand=Plus/Minus Query 282272 CGTACCGAGACCCTTGTAATACTTGATTTGATACTTAGAATAATCCTTCGTGGTCTTCAC 282331 |||||||||||| |||||||||||||| | || | || |||| || | || Sbjct 6520 CGTACCGAGACCTTTGTAATACTTGATGG----CCCAGCCTTTACCCTCGTTGT--TGAC 6467 Query 282332 ------CCAATCCTCGTAATCCGGAAGACTATAAAATTCGCGAACGTCCTTT--CCTTTC 282383 ||| | ||||| ||||| | | |||||| |||| ||| || || ||| Sbjct 6466 GAGCTTCCAGTTTTCGTATTCCGGCAACGTGTAAAATACGCG--CGTTTGTTGGCCCTTC 6409 Query 282384 TTGGCGACCACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGAGAC-T 282442 | || | ||| || ||||| |||| | ||| ||||| ||||||| | | | | Sbjct 6408 GTCGCCTTAATGATGGGCGTGATAAACTCCAACAAAAAACCAGGAATTTTCAACAAAGAT 6349 Query 282443 GGGAAAACAGCTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATC 282502 ||||| || |||| |||||| || | | ||| ||||| | || || ||| Sbjct 6348 GGGAAGTGCGCG-TGGAGAAAGTTGATCAACAAACCTTTGATGTGCGAACCATCGTGATC 6290 Query 282503 CGCGTCGGTCATGATCATCACATGACCGTATCTCAGAG-----AAGAAGTGT-CTTTGTA 282556 | || ||||||||||||| | || ||||||| | | | | | | | ||||| Sbjct 6289 CTGATCCGTCATGATCATCAACTTCCCATATCTCAACGTCTTGATGGATTCTTCATTGTA 6230 Query 282557 CACTTTACCGGTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGT 282616 | ||| || ||| | |||||||| ||||||| ||||||||| ||| |||| Sbjct 6229 CGATTTGCCATGTTGCAACCCCAAAATCTGTTTGATGTTGGTGATTTC--CGTA--TTGT 6174 Query 282617 GAT--ACTTGC-CACA-GATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAA 282672 | ||||| || | || || ||||||||||||| |||||| || || | ||||| | Sbjct 6173 TCTTCACTTGATCAAACGAAGCGTCGCGAACGTTCAACAACTTCCCTCGCAACGGAAACA 6114 Query 282673 CACCATATCTCTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAAT 282732 | ||||| | || | || || | ||||| || | || || | || | ||||||| Sbjct 6113 CCCCATAGTTGTCTCTGCCAACGATGGACAAACCGGAAACGGCCAATGCTTTCGCGGAAT 6054 Query 282733 CTCCCTCCGTCAAGATGAGAGTACA 282757 | ||||| || || || | ||| || Sbjct 6053 CCCCCTCGGTTAAAATCAAAGTGCA 6029 >seq70 Length=28206 Score = 95.1 bits (104), Expect = 3e-14 Identities = 296/447 (66%), Gaps = 16/447 (4%) Strand=Plus/Minus Query 230172 GTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTT 230231 ||| ||||| ||| | |||| | | ||| || ||||| ||| | || ||| ||||| Sbjct 6777 GTTCGCCGAACGTTTAGTCGGGTTCGCGTGCGTGGAAGGGATTTTTTTCAGCGGCAGTTT 6718 Query 230232 CTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 230291 |||||||||||||||| | ||| | ||| ||||| ||| | | |||||||| Sbjct 6717 CTGCGCCATCTTTTGGTTAAAGAAGAGAGGGTTGATGAAAGGCTTGACATTTTCTAACGA 6658 Query 230292 GTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCG---GCGAGCTTATGTATTCAAA 230348 ||| |||||||||||||| || | ||| | |||| ||||| ||||||| | Sbjct 6657 GTTGATCAGTCGCGACGAAGGGTTACATTGCGATTTCGCGTGCGAG---TTGTATTCGGA 6601 Query 230349 GCTCCAGAACAAGCTACCATTCGAGACG--GTCAAAC-AAATCATTACAGAAGCAGTTGA 230405 | | ||||||| || | ||| || || || | ||| | | | ||||| Sbjct 6600 ATTGAAACACAAGCT--CAGT-GAGGCGCAGTTGCACGAGATCGTATCCAACGCAGTCAC 6544 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTG 230464 | |||||| || ||| | || || || | || ||| ||| ||||||||||||| | Sbjct 6543 CATCGAAAAAGAATTCGTCTGCGATGCGTTGAGCTG-CGCTTTAGTTGGCATGAACGCGG 6485 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACG 230524 | | ||| | | ||| |||| || || ||||| || | ||| |||| || | | Sbjct 6484 ATTTAATGTCAGATTACGTCGAGTTTGTCGCCGATCGTTTGCTTG-TGCAATTAGGCGCA 6426 Query 230525 AG-AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 || ||| |||||| | | ||||| || | | ||||| ||||| | ||||| Sbjct 6425 AGCAAATATTACAACGCGCAAAACCCATTCGATTGGATGGAAACTATTTCATTGCAAGGC 6366 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTC 230610 ||| | ||||| |||||| | || ||| Sbjct 6365 AAGGCGAACTTTTTCGAACATCGAGTC 6339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057795293962340