Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq97 87.8 2e-12 seq70 86.0 6e-12 >seq97 Length=23129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 182/271 (67%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 118934 ATTTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTC 118993 || ||||||| || || ||||| || ||| ||||| ||||| || |||||| | | Sbjct 22345 ATGTCATGTACCGAATTTTTCCGAACACGTCGCGCTCTTTCCACCCTTGGTCGTGCACGC 22286 Query 118994 CTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACT 119053 | | | | ||| | ||||| ||||| ||| | |||||| ||||||| | | | Sbjct 22285 CGACGATGGACCACATGCATCCAACGTAACCGCTCGGATCTCTTCCGTCGAGCGACCAGC 22226 Query 119054 TATCGTTTAAGTAGATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 |||||| || ||| | | || || |||| ||||| | |||||||| | Sbjct 22225 GATCGTTCAAAGCGATGGCGTATTTCAAAGCGTTTTCGGGAGTATCGGACCATTCCAAGA 22166 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 |||| || ||||| ||||| || | | |||||||||||||| ||| || | || Sbjct 22165 TTTTCTTTGCCCAATACATGCGCATGAATCCGTGCATTTTACCACCGTAAACGAGCTCGC 22106 Query 119174 GTTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204 |||| || | |||||||| | ||||| || Sbjct 22105 GTTGCGCAGCGTTCCATAAATTGTCGTGCGT 22075 >seq70 Length=28206 Score = 86.0 bits (94), Expect = 6e-12 Identities = 366/567 (65%), Gaps = 26/567 (5%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 |||||||| |||||||||| |||||||| | ||||| | ||||| ||||| || || Sbjct 6616 CACGCGAAATCGCAATGTAACCCTTCGTCGCGACTGATCAACTCGTTAGAAAATGTCAAG 6675 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAAAGA 16319 ||| ||| |||| ||||||||||| || || ||||| || || | | |||| | Sbjct 6676 CCTTTCATCAACCCTCTCTTCTTTAACCAAAAGATGGCGCAGAAACTGCCGCTGAAA--A 6733 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC--ATCTTTATT 16377 | || || || || | || || ||| ||| ||||| ||| || | || | ||| Sbjct 6734 AAATCCCTTCCACGCACGCGAACCCGACTAAACGTTCGGCGAACCTCGCCGAGGGGGATT 6793 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 |||||||||| |||| || ||||| | ||| | ||||| | || || Sbjct 6794 --CAATCCATTTCATCGCCCAATCCGCTTTCTTTTTCACGGTTGGAATCGTATGAATCGC 6851 Query 16438 CTTAAAC-AATTTCTCTTTTTCCTGAAT---ATCGATTATATACGTATCAATCAGTAAAC 16493 |||| |||||||||| |||||| || | | ||||| || | || ||| Sbjct 6852 TCCAAACAAATTTCTCTT----CTGAATCGGGTCTTTCACGTACGTCTCTAACAACAAAG 6907 Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553 ||| |||| ||| || || || || ||| |||||| | || || ||| |||| Sbjct 6908 CATACGTTTCGCTGTGAATATTTTCAATCGCTTGCTGAAACGCGTAAAACGCTCGTGCCT 6967 Query 16554 CCGCTATTTGTA---CTTCCACGTAAAATCGTTCCGC-CAGGTTCTCATTCACGATACCG 16609 | | | ||| | ||| || | | | | ||| || ||||| || || ||| Sbjct 6968 CGGGAACTTGAATCTCTTTCATG----AACCTCACGCACAAATTCTCCAAGACAATGCCG 7023 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCG-TCAGATGTAAG 16668 || || || ||||||||||| | ||| | || || | || ||| || || | || Sbjct 7024 TCCGAGGCTGCGAAAAACGCCAAAACATGCGTGATAAAGTGTTGCTCGTTCTCAT-TCAG 7082 Query 16669 AATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGC 16728 | ||||||| | |||| | | | ||| | || || | |||||||||||| || Sbjct 7083 CGTGATCCAATCTCTGTAATCGTACGTCAAATCAATCTCCTCCGCCGTCCAAAAGCTCGC 7142 Query 16729 CACTGCCTTTTTATACATTTTCCAAAT 16755 | | || || || || || |||||| Sbjct 7143 CTCCGCTTTCTTGTAATATTCCCAAAT 7169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511400860303760