Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 145 9e-30 >seq11 Length=57886 Score = 145 bits (160), Expect = 9e-30 Identities = 560/872 (64%), Gaps = 6/872 (1%) Strand=Plus/Plus Query 53783 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 53842 ||||| || |||||||||||||| || ||| ||| |||||||||||| | | ||| Sbjct 11763 TTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCACGCATCCTTAAACAACATG 11822 Query 53843 AATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTT 53902 |||| | |||||||| | || | ||| | ||| || ||| | | || || Sbjct 11823 TATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAATAGCAAACCAAAGCTGCTGGGCATTA 11882 Query 53903 ATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCT 53962 ||| | ||| | |||||||||||||| || |||| ||| || || || Sbjct 11883 ATTGTCTTCTTGCCCTTGTTTTCTCTTTCGTACTTGGTGTACAGAGCTTCGAATTCTTCA 11942 Query 53963 CCCCAAACATT-GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 54021 ||||| |||| | ||| || || || || | ||| ||||||| | ||||| |||| Sbjct 11943 CCCCAG-CATTCGGACAAACCCGGGCACTCGTTCGGGCACATCAGTGTCCACTTGCCGTT 12001 Query 54022 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA-TCTCTGG 54080 || | |||| |||||| || | ||| |||| | ||| |||| | || | | Sbjct 12002 TTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACA-AGCCGTAAAACAAGTCACGAG 12060 Query 54081 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 54140 |||| ||| || || || |||||| | | |||||| | | | || || || | Sbjct 12061 CTCTAGCTTCTTCCTTGCCGTGGTTCTTTCTCAAATCGAGCCAGTCGAAGATGTCCGAGT 12120 Query 54141 GCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 54200 |||| ||||| | || |||| | | | || || || || || || || | | Sbjct 12121 GCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTGCGCTTACCGCCGCCTTGGTCCACAT 12180 Query 54201 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGG 54260 | || || |||| || | || | | ||| ||||||||||| || || | ||| || | Sbjct 12181 ACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGAATAATACCGTTCGAAGTACCGTTTG 12240 Query 54261 TCCCGGAGATATAGCTTCCAC-TGGCACGAATATTACTAATTGATAGACCTATCCCCCCT 54319 | || |||||| | || ||||||| || | ||| || | ||| || || || Sbjct 12241 TGCCTCTGATATA-CGAAGACGTGGCACGGATGTCGTGAATGGACAAACCGATACCACCG 12299 Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379 || || || || | ||||| || ||||| || ||||| || || || || Sbjct 12300 GCGGACTTGGAAATGCACGCGCACTCCTTCAACGTGTCGTAGATACCTTCAATGGAGTCT 12359 Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439 ||| ||||| || | ||| || || | || | ||| || || || || || Sbjct 12360 TCCTTCATGCAAATCAAAAAGCACGAGGAGAGCTGCGGTCGAGGTGTACCAGCGTTGAAC 12419 Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499 ||||| || || || ||||| | ||| ||||| | | | ||| || || ||||| Sbjct 12420 AAGGTTGGCGACGCATGCGTCATCCAACGCTCAGACAACATGTGGTAGGTTTCAATAGCC 12479 Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559 || |||||| | || || || | | || | ||| ||||||||||| || | Sbjct 12480 TTTTCGATATCCTTCTTGTGGATACCGATGGATACTCTCATCAACATGTGCTGTGGACGC 12539 Query 54560 TCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 || || | ||| || ||| || |||||| || |||||||||||| |||||||| Sbjct 12540 TCGACAACCTTACCGTCTATGCGCAACAAGTATGAGCGTTCCAAAGTTTTGAAACCAAAG 12599 Query 54620 TAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||| || |||||| || ||||| | ||| Sbjct 12600 TAGTCATAATCAAAGTCACGGTCGTAGACAAT 12631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593705881220640