Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq64 113 5e-20 seq330 98.7 1e-15 seq329 98.7 1e-15 seq327 98.7 1e-15 seq114 98.7 1e-15 seq277 91.5 2e-13 >seq64 Length=29840 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40705 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AAC 40763 ||||| | ||||| ||||||||||| |||| ||||| | | |||| | | ||| Sbjct 4879 AAAACTTTGACGGGGAAAACCATCACTCTCGAAGTCGAGTCTTCGGACACGATCGACAAC 4820 Query 40764 GCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTA 40823 | | || | ||||||| ||||| ||||||||||| |||||||||| ||| | || | Sbjct 4819 G-TGAAAGCGAAAATTCAAGACAAGGAGGGCATCCCGCCGGACCAGCAGCGATTGATTTT 4761 Query 40824 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGC 40883 || || ||||| | || |||| | | || ||| || ||||||||||| || ||| | Sbjct 4760 TGCCGGTAAACAATTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAGTC 4701 Query 40884 CACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 |||| |||| | || ||| | ||||| || ||||| Sbjct 4700 CACGTTGCACTTGGTTTTGAGATTGAGAGGTGGCGG 4665 >seq330 Length=7938 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 |||| ||| || |||| || ||||| |||||| ||| |||||||||| ||| |||| Sbjct 3877 TTCGCCGAACGTTTGGTCGCGTTCGCCTGCGTCGAAGGCATCTTCTTTTCCGGCTCTTTC 3936 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 | |||| | ||||||||||| | ||| | ||||| || || || ||| ||| ||| Sbjct 3937 TGCTCCATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAG 3996 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 | |||||||| || || ||| |||| | || || || || ||||| Sbjct 3997 TTGATCTCCAGAGATGAAGGTTTGCACAGAGATTTCGCGTGCTTGCT 4043 >seq329 Length=7938 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 |||| ||| || |||| || ||||| |||||| ||| |||||||||| ||| |||| Sbjct 3877 TTCGCCGAACGTTTGGTCGCGTTCGCCTGCGTCGAAGGCATCTTCTTTTCCGGCTCTTTC 3936 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 | |||| | ||||||||||| | ||| | ||||| || || || ||| ||| ||| Sbjct 3937 TGCTCCATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAG 3996 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 | |||||||| || || ||| |||| | || || || || ||||| Sbjct 3997 TTGATCTCCAGAGATGAAGGTTTGCACAGAGATTTCGCGTGCTTGCT 4043 >seq327 Length=7986 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 |||| ||| || |||| || ||||| |||||| ||| |||||||||| ||| |||| Sbjct 4110 TTCGCCGAACGTTTGGTCGCGTTCGCCTGCGTCGAAGGCATCTTCTTTTCCGGCTCTTTC 4051 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 | |||| | ||||||||||| | ||| | ||||| || || || ||| ||| ||| Sbjct 4050 TGCTCCATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAG 3991 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 | |||||||| || || ||| |||| | || || || || ||||| Sbjct 3990 TTGATCTCCAGAGATGAAGGTTTGCACAGAGATTTCGCGTGCTTGCT 3944 >seq114 Length=19556 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 |||| ||| || |||| || ||||| |||||| ||| |||||||||| ||| |||| Sbjct 3877 TTCGCCGAACGTTTGGTCGCGTTCGCCTGCGTCGAAGGCATCTTCTTTTCCGGCTCTTTC 3936 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 | |||| | ||||||||||| | ||| | ||||| || || || ||| ||| ||| Sbjct 3937 TGCTCCATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAG 3996 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 | |||||||| || || ||| |||| | || || || || ||||| Sbjct 3997 TTGATCTCCAGAGATGAAGGTTTGCACAGAGATTTCGCGTGCTTGCT 4043 >seq277 Length=9178 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | |||||||| || |||||| ||||||| || || | || Sbjct 8220 AACG-TCAAGGCGAAGATCCAAGACAAAGAAGGGATCCCCCCGGACCAACAGCGGTTGAT 8162 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 | ||| || || || |||| |||| ||| || | || ||||||||||| ||||| Sbjct 8161 ATTCGCCGGGAAGCAATTGGAAGACGGGCGAACGTTGGCGGATTACAACATCCAAAAGGA 8102 Query 40881 GGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | |||||||| ||||| |||| ||| | |||||| Sbjct 8101 ATCGACGCTGCACTTAGTGCTGCGTTTGCGAGGCGGC 8065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515205559571680