Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq11 138 2e-27 >seq11 Length=57886 Score = 138 bits (152), Expect = 2e-27 Identities = 406/620 (65%), Gaps = 13/620 (2%) Strand=Plus/Minus Query 248794 ATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCG 248853 |||| ||||| | || || || || || | ||||| ||||||||| |||| || Sbjct 12631 ATTGTCTACGACCGTGACTTTGATTATGACTACTTTGGTTTCAAAACTTTGGAACGCTCA 12572 Query 248854 TATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTG 248913 || | | || || || ||| | || || || ||||||||||||||| |||| Sbjct 12571 TACTTGTTGCGCATAGACGGTAAGGTTGTCGAGCGTCCACAGCACATGTTGATGAGAGTA 12512 Query 248914 GCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT 248973 | |||| || |||||| | || || || | | | || || ||| | || | Sbjct 12511 TCCATCGGTATCCACAAGAAGGATATCGAAAAGGCTATTGAAACCTACCACATGTTGTCT 12452 Query 248974 GAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCA 249032 || || |||||||| ||||| | || || | |||||||| ||||| | || || || Sbjct 12451 GAGCGTTGGATGACGCATGCGTCGCCAACCTTGTTCAACGCTGGTACACCTCGAC-CGCA 12393 Query 249033 GCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACAC 249092 ||| |||||||||| | || |||| | || ||||| | || || || || ||||| Sbjct 12392 GCTCTCCTCGTGCTTTTTGATTTGCATGAAGGAAGACTCCATTGAAGGTATCTACGACAC 12333 Query 249093 GCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAA 249152 | | || || ||| ||||| || | ||| || || |||||| | ||| | | | Sbjct 12332 GTTGAAGGAGTGCGCGTGCATTTCCAAGTCCGCCGGTGGTATCGGTTTGTCCATTCACGA 12273 Query 249153 CATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACC 249212 |||||| || | | |||||| |||| ||| ||||| || | ||||| | || Sbjct 12272 CATCCGTGCCACGTCTTCGTATATCAGAGGCACAAACGGTACTTCGAACGGTATTATTCC 12213 Query 249213 CCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACC-AGGC--CGGGCGCCGAAA 249269 | ||||| || | ||| || |||| | ||| |||| ||| || || Sbjct 12212 GATGCTTCGGGTGTTCAACGACACAGCGAGGTATGTGGACCAAGGCGGCGGTAAGCGCAA 12153 Query 249270 GGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTT 249329 ||| | || ||||| ||| | ||| |||||| | || || || || | || || || Sbjct 12152 GGGCGCTTTTGCCATCTATCTCGAACCATGGCACTCGGACATCTTCGACTGGCTCGATTT 12093 Query 249330 GAAAAAGAACAACGGCAACG----AGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGT 249385 || ||||||| ||||||| | |||| ||||| |||||| | || |||||| ||| Sbjct 12092 GAGAAAGAACCACGGCAAGGAAGAAGCT----AGAGCTCGTGACTTGTTTTACGGCTTGT 12037 Query 249386 GGGTCTCCGACTTGTTCATG 249405 || ||| ||||||||| Sbjct 12036 GGACGAACGATTTGTTCATG 12017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073737261335424