Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11 206 2e-48 seq70 125 6e-24 seq64 91.5 1e-13 >seq11 Length=57886 Score = 206 bits (228), Expect = 2e-48 Identities = 787/1225 (64%), Gaps = 14/1225 (1%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| || || | ||||| ||||| || ||| || ||||| || || || || Sbjct 11685 GCGATGGATGCCAAGTTGCAAACGGCGGTTTCTTCTGGTGAAGTGTATTCGACGATCTCT 11744 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 ||||| | ||| | || |||||||| ||||| ||||| || || |||||| Sbjct 11745 GTACACAAGTTGGACGATTTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCAC 11804 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | |||||| | | |||||| || |||| || || || |||| |||| || || | Sbjct 11805 GCATCCTTAAACAACATGTATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAATAGCAAAC 11864 Query 23201 CACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 || | ||| || | || ||| | | | || |||| |||||||| ||| Sbjct 11865 CAAAGCTGCTGGGCATTAATT-GTCTTCTTGCCCTTGTTTTCTCTTTCGTACTTGGTGTA 11923 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 || || || ||||| |||| | || |||| || || || | | |||| ||||| Sbjct 11924 CAGAGCTTCGAATTCTTCACCCCAGCATTCGGACAAACCCGGGCACTCGTTCGGGCACAT 11983 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 || ||||| | || | ||| || | | |||| || | ||| |||| | | Sbjct 11984 CAGTGTCCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACAAGCC 12043 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 ||| |||| || || || | | || || |||||| ||||||| ||||||| | | Sbjct 12044 GTAAAACAAGTCACGAGCTCTAGCTTCTTCCTTGCCGTGGTTCTTTCTCAAATCGAGCCA 12103 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 ||| || | ||||| ||||| || ||||| || | |||||| |||||| | |||| Sbjct 12104 GTCGAAGATGTCCGAGTGCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTGCGCTTACC 12163 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 |||||| || || || || | || |||| |||| |||| | |||||||| | | ||| Sbjct 12164 GCCGCCTTGGTCCACATACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGAATAATACC 12223 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 ||| || | ||| | ||| | | |||| | || || | || ||||| | Sbjct 12224 GTTCGAAGTACCGTTTGTGCCTCTGATATACGAAGACGTGGCACGGATGTCGTGAATGGA 12283 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 ||||| || || ||| | || || || || |||||| | |||| ||||||||||| Sbjct 12284 CAAACCGATACCACCGGCGGACTTGGAAATGCACGCGCACTCCTTCAACGTGTCGTAGAT 12343 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 || || ||| ||| || || | | ||| || ||||| || | |||| | || Sbjct 12344 ACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAGCTGCGGTCGAGG 12403 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799 ||| | || ||||| || || || ||||| | | | | |||| | | Sbjct 12404 TGTACCAGCGTTGAACAAGGTTGGCGACGCATGCGTCATCCAACGCTCAGACAACATGTG 12463 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 ||| || || || || || || |||| ||| |||||||||| || | ||||| Sbjct 12464 GTAGGTTTCAATAGCCTTTTCGATATCCTTCTTGTGGATACCGATGGATACTCTCATCAA 12523 Query 23860 CATGTATTGAGGTCTCTCGAC--CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 ||||| || || | |||||| | | | |||| || |||| ||||| |||| | Sbjct 12524 CATGTGCTGTGGACGCTCGACAACCTTA--CCGTCTATGCGCAACAAGTATGAGCGTTCC 12581 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTC 23977 | ||||| || ||||| |||||||| | ||||||||| |||| || || | | || Sbjct 12582 AAAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCACGGTCGTAGACAATTTCGGCATCA 12641 Query 23978 AAACGGTACGCATTGGCAGCGATGATGTTGTAATGAAAAT--TCGA-TATCATCGGCGTT 24034 || | | |||||| | | ||||| | || | | ||| || | | | | Sbjct 12642 AATCTTTCCGCATTCTCCGTAATGATTTCATACACATCCTCGGCGAGTAACGGAGACCAT 12701 Query 24035 TTAACGCCG-GTCTTTGGATCGATCGCTTCATACATATCGATAATGACATCGAAAAAAGA 24093 || |||| ||| || ||| | ||| ||||| | | || | | ||||||| Sbjct 12702 TT---GCCGTTTCTGTGATTCG-TATGTTCGTACATCTTTTTCATCGTCTTGGAAAAAGA 12757 Query 24094 ATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCCGCAAGCAACGAATAGTC 24153 | | ||| ||||||||| || || ||||| | | || ||||| || |||||| Sbjct 12758 TTTGTCCGTCGTCTTGTGCAAGTTTGAAACGGCGATACGCGCGGCAAGTTGCGCATAGTC 12817 Query 24154 GGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGCGATTAGATTGTCCAATTCAGCGGT 24213 | ||| | | |||||||||||||| || || || || | ||||||||||| || Sbjct 12818 CGGATGCTTGGAAGTCATGGCCGCTGCGGTTTCAGCCGCAAGCTCATCCAATTCAGCAGT 12877 Query 24214 GGTCACGCCCGAATAGATTCCTTGA 24238 || ||||||| || | |||||| Sbjct 12878 CGTTACGCCCGGGTAAACGCCTTGA 12902 >seq70 Length=28206 Score = 125 bits (138), Expect = 6e-24 Identities = 579/897 (65%), Gaps = 30/897 (3%) Strand=Plus/Minus Query 57547 TGTTTCCGATTGAATATCCAGACATTTGG-AACATGTACAAAAAGGCAGAAGCATCGTTT 57605 |||| ||||| |||| || |||||| || || ||||| || || || || ||| Sbjct 7192 TGTTCCCGATGAAATACCCGAGGATTTGGGAATAT-TACAAGAAAGCGGAGGCGAGCTTT 7134 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAA 57665 ||||| | || || | || || | | ||| || |||||| | || || || Sbjct 7133 TGGACGGCGGAGGAGATTGATTTGACGTACGATTACAGAGATTGGATCACGCTGAATGAG 7074 Query 57666 TCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTT 57725 ||| | | ||||| | || || |||||||||||||| || || || || ||||| Sbjct 7073 AACGAGCAACACTTTATCACGCATGTTTTGGCGTTTTTCGCAGCCTCGGACGGCATTGTC 7014 Query 57726 AACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTT 57785 ||||||||| || || || |||| | ||||| | ||||| || ||| Sbjct 7013 TTGGAGAATTTGTGCGTGAGGTTCATGAAAGAGATTCAAGTTCCCGAGGCACGAGCGTTT 6954 Query 57786 TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGAT 57845 |||| ||||| || |||||||| | || |||| |||| | | | | || Sbjct 6953 TACGCGTTTCAGCAAGCGATTGAAAATATTCACAGCGAAACGTATGCTTTGTTGTTAGAG 6894 Query 57846 ACGTACGTGAAGGACAACGACG-AGAAACGTAGACTGTTCAACGCGATCGAAACAATGCC 57904 ||||||||||| ||| ||| |||| | | |||| ||||| | || || || Sbjct 6893 ACGTACGTGAAAGACC-CGATTCAGAAGAGAAATTTGTTTGGAGCGATTCATACGATTCC 6835 Query 57905 CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTT 57964 | | ||||| || || ||| | || |||||||| || | || |||| | ||| Sbjct 6834 AACCGTGAAAAAGAAAGCGGATTGGGCGATGAAATGGATTGAATCCCCCTCGGCGAGGTT 6775 Query 57965 CGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TG 58023 |||||| | || ||| |||||| ||| ||||| || || || ||||| || || Sbjct 6774 CGCCGAACGTTTAGTCGGGTTCGCGTGCGTGGAAGGGATTTTTTTCAGCGGCAGTTTCTG 6715 Query 58024 CGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGT 58083 || || | |||||| | ||||| | || ||||| ||| |||| ||| ||||||| Sbjct 6714 CGCCA-TCTTTTGGTTAAAGAAGAGAGGGTTGATGAAAGGCTTGACATTTTCTAACGAGT 6656 Query 58084 TGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTG 58143 |||| |||||||| || | ||| ||||| |||||| |||| || | |||| Sbjct 6655 TGATCAGTCGCGACGAAGGGTTACATTGCGATTTCGCGTGCGAGTTGTATTCGGA-ATTG 6597 Query 58144 TCAATAAACCGACGC---GGGA-TCGCATCTTG---GACATTATCACCGAGGCGGTCGCG 58196 |||| | || | || |||| ||| || || | || | || ||| | Sbjct 6596 -----AAACACAAGCTCAGTGAGGCGCA-GTTGCACGAGATCGTATCCAACGCAGTCACC 6543 Query 58197 ATCGAAAATGAGTTTGTCACCGAAGCCCT-ACCGGTGGCCATGCTCGGTATGAACAATGA 58255 |||||||| || || ||| ||| || | | | | || | | || |||||| || Sbjct 6542 ATCGAAAAAGAATTCGTCTGCGATGCGTTGAGCTG-CGCTTTAGTTGGCATGAACGCGGA 6484 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAG- 58314 ||| |||||| | ||| | |||||||| ||||| | |||||| | | | || | Sbjct 6483 TTTAATGTCAGATTACGTCGAGTTTGTCGCCGA---TCGTTTGCTTGTGCAATTAGGCGC 6427 Query 58315 -AGC-GTCATTACAACACGAAAAATCCGTTTGATTTTAT-GAATCTGATCTCGCTCGAGG 58371 ||| |||||||| || |||| || || |||| || ||| || || || | | | Sbjct 6426 AAGCAAATATTACAACGCGCAAAACCCATTCGATTGGATGGAAACT-ATTTCATTGCAAG 6368 Query 58372 GCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGA 58428 ||||| | |||||||||||| | ||| |||| |||||| ||| || |||| Sbjct 6367 GCAAGGCGAACTTTTTCGAACATCGAGTCGATCAATACCAAAAAGCCGGGGTCATGA 6311 >seq64 Length=29840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 ||||| ||| |||| || ||||| ||||| |||| || || | || |||| |||| Sbjct 4881 GTAAA-ACTTTGACGGGGAAAACCATCACTCTCGAAGTCGAGTCTTCGGACACGATCGAC 4823 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | || ||| || ||| |||||||| ||| | ||||| ||||||||||| | || Sbjct 4822 AACGTGAAAGCGAAAATTCAAGACAAGGAGGGCATCCCGCCGGACCAGCAGCGATTGATT 4763 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 || || || ||||| || |||||| | ||| | ||||| ||||| |||||||| Sbjct 4762 TTTGCCGGTAAACAATTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAG 4703 Query 31385 TCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || | || |||| | ||| |||| || || Sbjct 4702 TCCACGTTGCACTTGGTTTTGAGATTGAGAGGTGG 4668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445754598334560