Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11 176 6e-39 seq330 84.2 3e-11 seq329 84.2 3e-11 seq327 84.2 3e-11 seq114 84.2 3e-11 >seq11 Length=57886 Score = 176 bits (194), Expect = 6e-39 Identities = 569/873 (65%), Gaps = 8/873 (1%) Strand=Plus/Plus Query 63021 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63080 ||||| || |||||||||||||| || ||| ||| |||||||||||| | | ||| Sbjct 11763 TTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCACGCATCCTTAAACAACATG 11822 Query 63081 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTT 63139 |||| | |||||||| | || | ||| | ||| || ||| | | || | || || Sbjct 11823 TATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAATAGCAAACCAAAGCTGCTGG-GCATT 11881 Query 63140 TATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTC 63199 ||| | ||| | ||||||||||||| || |||| |||||| || || Sbjct 11882 AATTGTCTTCTTGCCCTTGTTTTCTCTTTCGTACTTGGTGTACAGAGCTTCGAATTCTTC 11941 Query 63200 TCCCCAAACATT-GTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63258 ||||| |||| | ||| | || || || | ||| ||||||| | ||||| |||| Sbjct 11942 ACCCCAG-CATTCGGACAAACCCGGGCACTCGTTCGGGCACATCAGTGTCCACTTGCCGT 12000 Query 63259 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA-TCTCTT 63317 || | |||| |||||| || | ||| |||| | ||| |||| | || | Sbjct 12001 TTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACA-AGCCGTAAAACAAGTCACGA 12059 Query 63318 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63377 | |||| ||| || || || |||||| | | |||||| | | | || || || Sbjct 12060 GCTCTAGCTTCTTCCTTGCCGTGGTTCTTTCTCAAATCGAGCCAGTCGAAGATGTCCGAG 12119 Query 63378 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63437 ||||| ||||| | || ||||| | | | || || || || || || || | Sbjct 12120 TGCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTGCGCTTACCGCCGCCTTGGTCCACA 12179 Query 63438 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63497 || || || |||| || | || | | ||| |||||||||||||| || |||| || Sbjct 12180 TACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGAATAATACCGTTCGAAGTACCGTTT 12239 Query 63498 GTACCGGAGATATAGCCTCCAC-TGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63556 || || |||||| | || ||||||| || | ||| || | ||| || || || Sbjct 12240 GTGCCTCTGATATA-CGAAGACGTGGCACGGATGTCGTGAATGGACAAACCGATACCACC 12298 Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616 || || || || | ||||| || |||||||| ||||| ||||| ||| || Sbjct 12299 GGCGGACTTGGAAATGCACGCGCACTCCTTCAACGTGTCGTAGATACCTTCAATGGAGTC 12358 Query 63617 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676 || ||||| || | ||| || || | || | |||| || || || || || Sbjct 12359 TTCCTTCATGCAAATCAAAAAGCACGAGGAGAGCTGCGGTCGAGGTGTACCAGCGTTGAA 12418 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 ||||| || || || ||||| | ||| ||||| | | | ||| || |||||||| Sbjct 12419 CAAGGTTGGCGACGCATGCGTCATCCAACGCTCAGACAACATGTGGTAGGTTTCAATAGC 12478 Query 63737 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 || |||||| | || || || | | || | ||| ||||||||||| || | Sbjct 12479 CTTTTCGATATCCTTCTTGTGGATACCGATGGATACTCTCATCAACATGTGCTGTGGACG 12538 Query 63797 TTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 || |||| || || ||| ||||||||| || |||||||||||| |||||||| Sbjct 12539 CTCGACAACCTTACCGTCTATGCGCAACAAGTATGAGCGTTCCAAAGTTTTGAAACCAAA 12598 Query 63857 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||| || |||||| || ||||| | ||| Sbjct 12599 GTAGTCATAATCAAAGTCACGGTCGTAGACAAT 12631 >seq330 Length=7938 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 33541 TTTCTTCACTCGGTG-GATGTAATAAAT-GTTTAAACATCAAACATGCGAAATCGCAGTG 33598 ||||||||| ||| | | ||| | || || |||| ||| || |||||||| | ||| Sbjct 4078 TTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAG--CAAGCACGCGAAATCTCTGTG 4021 Query 33599 CAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACG 33658 || ||| || ||||| || || || || || || || || || ||||| | ||| | Sbjct 4020 CAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCATGCCTCT 3961 Query 33659 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAG 33717 ||| || ||||| | ||||| ||| || |||||||||||||| ||||| || |||| Sbjct 3960 CTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGAC-GCAG 3903 >seq329 Length=7938 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 33541 TTTCTTCACTCGGTG-GATGTAATAAAT-GTTTAAACATCAAACATGCGAAATCGCAGTG 33598 ||||||||| ||| | | ||| | || || |||| ||| || |||||||| | ||| Sbjct 4078 TTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAG--CAAGCACGCGAAATCTCTGTG 4021 Query 33599 CAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACG 33658 || ||| || ||||| || || || || || || || || || ||||| | ||| | Sbjct 4020 CAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCATGCCTCT 3961 Query 33659 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAG 33717 ||| || ||||| | ||||| ||| || |||||||||||||| ||||| || |||| Sbjct 3960 CTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGAC-GCAG 3903 >seq327 Length=7986 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 33541 TTTCTTCACTCGGTG-GATGTAATAAAT-GTTTAAACATCAAACATGCGAAATCGCAGTG 33598 ||||||||| ||| | | ||| | || || |||| ||| || |||||||| | ||| Sbjct 3909 TTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAG--CAAGCACGCGAAATCTCTGTG 3966 Query 33599 CAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACG 33658 || ||| || ||||| || || || || || || || || || ||||| | ||| | Sbjct 3967 CAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCATGCCTCT 4026 Query 33659 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAG 33717 ||| || ||||| | ||||| ||| || |||||||||||||| ||||| || |||| Sbjct 4027 CTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGAC-GCAG 4084 >seq114 Length=19556 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 33541 TTTCTTCACTCGGTG-GATGTAATAAAT-GTTTAAACATCAAACATGCGAAATCGCAGTG 33598 ||||||||| ||| | | ||| | || || |||| ||| || |||||||| | ||| Sbjct 4078 TTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAG--CAAGCACGCGAAATCTCTGTG 4021 Query 33599 CAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACG 33658 || ||| || ||||| || || || || || || || || || ||||| | ||| | Sbjct 4020 CAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCATGCCTCT 3961 Query 33659 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAG 33717 ||| || ||||| | ||||| ||| || |||||||||||||| ||||| || |||| Sbjct 3960 CTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGAC-GCAG 3903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800925579040