Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11 163 4e-35 >seq11 Length=57886 Score = 163 bits (180), Expect = 4e-35 Identities = 564/872 (65%), Gaps = 6/872 (1%) Strand=Plus/Plus Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 79752 || || || |||||||||||||| || ||| ||| |||||||||||| | | ||| Sbjct 11763 TTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCACGCATCCTTAAACAACATG 11822 Query 79753 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTT 79811 | || | |||||||| | || | ||| | ||| || ||| | | || | || || Sbjct 11823 TATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAATAGCAAACCAAAGCTGCTGG-GCATT 11881 Query 79812 TATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 79871 ||| | |||| | |||||||||||||| | || || | |||||| || || Sbjct 11882 AATTGTCTTCTTGCCCTTGTTTTCTCTTTCGTACTTGGTGTACAGAGCTTCGAATTCTTC 11941 Query 79872 TCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATC 79931 ||||| ||| || || || || |||| || ||||||| | ||||| || | Sbjct 11942 ACCCCAGCATTCGGACAAACCCGGGCACTCGTTCGGGCACATCAGTGTCCACTTGCCGTT 12001 Query 79932 ATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA-TCTCTGG 79990 || | |||| |||||| || | ||| |||| | ||| |||| | || | | Sbjct 12002 TTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACA-AGCCGTAAAACAAGTCACGAG 12060 Query 79991 TTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 80050 |||| || || || || |||||| | | |||||| | | | || || || | Sbjct 12061 CTCTAGCTTCTTCCTTGCCGTGGTTCTTTCTCAAATCGAGCCAGTCGAAGATGTCCGAGT 12120 Query 80051 GCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGT 80110 |||| ||||| | || ||||| | | | ||| || || || || || || | | Sbjct 12121 GCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTGCGCTTACCGCCGCCTTGGTCCACAT 12180 Query 80111 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 80170 | || || |||| || | || | | ||| ||||||||||| || || ||||| || | Sbjct 12181 ACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGAATAATACCGTTCGAAGTACCGTTTG 12240 Query 80171 TCCCGGAGATATAGCTTCCAC-TGGCACGAATATTACTAATTGATAGACCTATTCCCCCT 80229 | || |||||| | || ||||||| || | ||| || | ||| || || || Sbjct 12241 TGCCTCTGATATA-CGAAGACGTGGCACGGATGTCGTGAATGGACAAACCGATACCACCG 12299 Query 80230 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCA 80289 || || || || | ||||| || ||||| || ||||| || || ||| || Sbjct 12300 GCGGACTTGGAAATGCACGCGCACTCCTTCAACGTGTCGTAGATACCTTCAATGGAGTCT 12359 Query 80290 TCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 80349 || ||||| || | ||| || || | || | ||| || || || || || Sbjct 12360 TCCTTCATGCAAATCAAAAAGCACGAGGAGAGCTGCGGTCGAGGTGTACCAGCGTTGAAC 12419 Query 80350 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCT 80409 ||||| || || || ||||| | ||| ||||||| | | ||| || |||||||| Sbjct 12420 AAGGTTGGCGACGCATGCGTCATCCAACGCTCAGACAACATGTGGTAGGTTTCAATAGCC 12479 Query 80410 GATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTT 80469 ||| |||||| | || || || | | || | ||| ||||||||||| || | Sbjct 12480 TTTTCGATATCCTTCTTGTGGATACCGATGGATACTCTCATCAACATGTGCTGTGGACGC 12539 Query 80470 TCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAA 80529 || || | ||| | ||| ||||||||| || |||||||||||| |||||||| Sbjct 12540 TCGACAACCTTACCGTCTATGCGCAACAAGTATGAGCGTTCCAAAGTTTTGAAACCAAAG 12599 Query 80530 TAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||| || |||||| || ||||| | ||| Sbjct 12600 TAGTCATAATCAAAGTCACGGTCGTAGACAAT 12631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718249783833520