Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 179 5e-40 seq330 91.5 2e-13 seq329 91.5 2e-13 seq327 91.5 2e-13 seq114 91.5 2e-13 >seq11 Length=57886 Score = 179 bits (198), Expect = 5e-40 Identities = 570/873 (65%), Gaps = 8/873 (1%) Strand=Plus/Plus Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATA 71835 ||||| || |||||||||||||| || ||| ||| |||||||||||| | | || Sbjct 11763 TTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCACGCATCCTTAAACAACATG 11822 Query 71836 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTT 71894 | || | |||||||| | || | ||| | ||| || ||| | | || | || || Sbjct 11823 TATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAATAGCAAACCAAAGCTGCTGG-GCATT 11881 Query 71895 TATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954 ||| | |||||| | |||||||||||||| | || || | |||||| || || Sbjct 11882 AATTGTCTTCTTGCCCTTGTTTTCTCTTTCGTACTTGGTGTACAGAGCTTCGAATTCTTC 11941 Query 71955 TCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCAT 72013 ||||| ||||| | || || || || || ||||| ||||||| || ||||| || | Sbjct 11942 ACCCCA-GCATTCGGACAAACCCGGGCACTCGTTCGGGCACATCAGTGTCCACTTGCCGT 12000 Query 72014 CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA-TCTCTG 72072 || | |||| |||||| || | ||| |||| | ||| |||| | || | Sbjct 12001 TTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACA-AGCCGTAAAACAAGTCACGA 12059 Query 72073 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 72132 | |||| || || || || |||||| | | |||||| | | | || || || Sbjct 12060 GCTCTAGCTTCTTCCTTGCCGTGGTTCTTTCTCAAATCGAGCCAGTCGAAGATGTCCGAG 12119 Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192 ||||| ||||| | || ||||| | | | ||| || || || || || || | Sbjct 12120 TGCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTGCGCTTACCGCCGCCTTGGTCCACA 12179 Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252 || || || |||| || | || | | ||| ||||||||||| || || | ||| || Sbjct 12180 TACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGAATAATACCGTTCGAAGTACCGTTT 12239 Query 72253 GTCCCGGAGATATAGCTTCCAC-TGGCACGAATATTGCTAATTGATAGACCTATTCCCCC 72311 || || |||||| | || ||||||| || | | ||| || | ||| || || || Sbjct 12240 GTGCCTCTGATATA-CGAAGACGTGGCACGGATGTCGTGAATGGACAAACCGATACCACC 12298 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 || || || || | ||||| || ||||| || ||||| || || || || Sbjct 12299 GGCGGACTTGGAAATGCACGCGCACTCCTTCAACGTGTCGTAGATACCTTCAATGGAGTC 12358 Query 72372 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 72431 ||| ||||| || | ||| || || | || | ||| || || || || || Sbjct 12359 TTCCTTCATGCAAATCAAAAAGCACGAGGAGAGCTGCGGTCGAGGTGTACCAGCGTTGAA 12418 Query 72432 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGC 72491 ||||| || || || ||||| | ||| ||||||| | | ||| || |||||||| Sbjct 12419 CAAGGTTGGCGACGCATGCGTCATCCAACGCTCAGACAACATGTGGTAGGTTTCAATAGC 12478 Query 72492 TGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCT 72551 ||| |||||| | || || || | | || | ||| ||||| ||||| || | Sbjct 12479 CTTTTCGATATCCTTCTTGTGGATACCGATGGATACTCTCATCAACATGTGCTGTGGACG 12538 Query 72552 TTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 72611 || || | ||| | ||| ||||||||| || |||||||||||| |||||||| Sbjct 12539 CTCGACAACCTTACCGTCTATGCGCAACAAGTATGAGCGTTCCAAAGTTTTGAAACCAAA 12598 Query 72612 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||| || |||||| || ||||| | ||| Sbjct 12599 GTAGTCATAATCAAAGTCACGGTCGTAGACAAT 12631 >seq330 Length=7938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 279/425 (66%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||| |||||||| ||||| || || || || || ||||| |||| ||| || || | Sbjct 4328 TTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAAT 4269 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| | |||||||| || | ||||| || || || | | || | | Sbjct 4268 TCCATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGC 4209 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || ||| || | | || || || | ||||||| || ||||| || | ||| Sbjct 4208 AAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGC 4149 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||| | || | | ||| || | ||||| ||||| || || | ||| Sbjct 4148 GCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATC 4089 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAA-AT-GTTTAAACATCAAACATGCGA 42071 ||| | | ||||||||| ||| | | ||| || || |||| ||| || |||| Sbjct 4088 TTTCTCAATTTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAG--CAAGCACGCGA 4031 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 |||| | ||||| ||| |||||||| || || || ||||| || || || || |||| Sbjct 4030 AATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCA 3971 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCT 42190 | | ||| | ||| || ||||| | || || ||| || || || ||||||||||| ||| Sbjct 3970 TCATGCCTCTCTTCTTGAGCCAGTAGATGGA-GCAGAAAGAGCCGGAAAAGAAGATGCCT 3912 Query 42191 TCTAC 42195 || || Sbjct 3911 TCGAC 3907 >seq329 Length=7938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 279/425 (66%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||| |||||||| ||||| || || || || || ||||| |||| ||| || || | Sbjct 4328 TTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAAT 4269 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| | |||||||| || | ||||| || || || | | || | | Sbjct 4268 TCCATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGC 4209 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || ||| || | | || || || | ||||||| || ||||| || | ||| Sbjct 4208 AAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGC 4149 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||| | || | | ||| || | ||||| ||||| || || | ||| Sbjct 4148 GCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATC 4089 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAA-AT-GTTTAAACATCAAACATGCGA 42071 ||| | | ||||||||| ||| | | ||| || || |||| ||| || |||| Sbjct 4088 TTTCTCAATTTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAG--CAAGCACGCGA 4031 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 |||| | ||||| ||| |||||||| || || || ||||| || || || || |||| Sbjct 4030 AATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCA 3971 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCT 42190 | | ||| | ||| || ||||| | || || ||| || || || ||||||||||| ||| Sbjct 3970 TCATGCCTCTCTTCTTGAGCCAGTAGATGGA-GCAGAAAGAGCCGGAAAAGAAGATGCCT 3912 Query 42191 TCTAC 42195 || || Sbjct 3911 TCGAC 3907 >seq327 Length=7986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 279/425 (66%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||| |||||||| ||||| || || || || || ||||| |||| ||| || || | Sbjct 3659 TTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAAT 3718 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| | |||||||| || | ||||| || || || | | || | | Sbjct 3719 TCCATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGC 3778 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || ||| || | | || || || | ||||||| || ||||| || | ||| Sbjct 3779 AAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGC 3838 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||| | || | | ||| || | ||||| ||||| || || | ||| Sbjct 3839 GCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATC 3898 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAA-AT-GTTTAAACATCAAACATGCGA 42071 ||| | | ||||||||| ||| | | ||| || || |||| ||| || |||| Sbjct 3899 TTTCTCAATTTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAG--CAAGCACGCGA 3956 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 |||| | ||||| ||| |||||||| || || || ||||| || || || || |||| Sbjct 3957 AATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCA 4016 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCT 42190 | | ||| | ||| || ||||| | || || ||| || || || ||||||||||| ||| Sbjct 4017 TCATGCCTCTCTTCTTGAGCCAGTAGATGGA-GCAGAAAGAGCCGGAAAAGAAGATGCCT 4075 Query 42191 TCTAC 42195 || || Sbjct 4076 TCGAC 4080 >seq114 Length=19556 Score = 91.5 bits (100), Expect = 2e-13 Identities = 279/425 (66%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||| |||||||| ||||| || || || || || ||||| |||| ||| || || | Sbjct 4328 TTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAAT 4269 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| | |||||||| || | ||||| || || || | | || | | Sbjct 4268 TCCATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGC 4209 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || ||| || | | || || || | ||||||| || ||||| || | ||| Sbjct 4208 AAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGC 4149 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||| | || | | ||| || | ||||| ||||| || || | ||| Sbjct 4148 GCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATC 4089 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAA-AT-GTTTAAACATCAAACATGCGA 42071 ||| | | ||||||||| ||| | | ||| || || |||| ||| || |||| Sbjct 4088 TTTCTCAATTTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAG--CAAGCACGCGA 4031 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 |||| | ||||| ||| |||||||| || || || ||||| || || || || |||| Sbjct 4030 AATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCA 3971 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCT 42190 | | ||| | ||| || ||||| | || || ||| || || || ||||||||||| ||| Sbjct 3970 TCATGCCTCTCTTCTTGAGCCAGTAGATGGA-GCAGAAAGAGCCGGAAAAGAAGATGCCT 3912 Query 42191 TCTAC 42195 || || Sbjct 3911 TCGAC 3907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671121431589680