Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11 105 1e-17 >seq11 Length=57886 Score = 105 bits (116), Expect = 1e-17 Identities = 320/490 (65%), Gaps = 16/490 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || |||||| ||| || |||||| | ||| |||| | ||||| |||||| ||||| Sbjct 12172 CAAGGCGGCGGTAAGCGCAAGGGCGCTTTTGCCATCTATCTCGAACCATGGCACTCGGAC 12113 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | || |||| |||| || | || ||| ||| ||||| || |||| | ||| Sbjct 12112 ATCTTCGACTGGCTCGATTTGAGAAAGAACCACGGCAAGGAAGAAGCTAGAGCTCGTGAC 12053 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||||||| | | ||| | |||||||||||||| | ||| | || ||| | Sbjct 12052 TTGTTTTACGGCTTGTGGACGAACGATTTGTTCATGAAAAGAGTCGAAGAAAACGGCAAG 11993 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || |||||||| || || || ||| ||||||| |||||||| ||||| || Sbjct 11992 TGGACACTGATGTGCCCGAACGAGTGCCCGGGTTTGTCCGAATGCTGGGGTGAAGAATTC 11933 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAG-------GGCCGATACGTGAGACGAGTCGA 97168 || || |||||| ||||| ||||| || | | | |||| | | | Sbjct 11932 GAAGCTCTGTACACCAAGTACGA--AAGAGAAAACAAGGGCAAGA----AGAC-AATTAA 11880 Query 97169 TGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACAT 97228 ||| | | || ||| || || | || || || || ||||| | || ||||| Sbjct 11879 TGCCCAGCAGCTTTGGTTTGCTATTCTCGAAGCGCAAGTGGAAACTGGCAACCCATACAT 11820 Query 97229 TCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGG 97287 | | |||||| |||| || ||||| ||||||| | || ||||| ||||| Sbjct 11819 GTTGTTTAAGGAT-GCGTGCAACCGCAAGTCAAACCAACAAAATTTAGGCACGATCAAAT 11761 Query 97288 GCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCG 97347 ||||| |||| || || || || || ||| | || || || || || || |||||| Sbjct 11760 CGTCCAACTTGTGTACAGAGATCGTCGAATACACTTCACCAGAAGAAACCGCCGTTTGCA 11701 Query 97348 TTCTGGCATC 97357 ||||||| Sbjct 11700 ACTTGGCATC 11691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741039580457680