Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq277 84.2 1e-11 seq64 82.4 5e-11 >seq277 Length=9178 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||||| || |||| ||| || |||| ||||| || ||||| || |||||||| | | Sbjct 8066 CCGCCTCGCAAACGCAGCACTAAGTGCAGCGTCGATTCCTTTTGGATGTTGTAATCCGCC 8125 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | ||| ||||||||||| || ||||| || || || ||||||| ||| Sbjct 8126 AACGTTCGCCCGTCTTCCAATTGCTTCCCGGCGAATATCAACCGCTGTTGGTCCGGGGGG 8185 Query 33263 ATGCCTTCTTTTTC 33276 || |||||||| || Sbjct 8186 ATCCCTTCTTTGTC 8199 >seq64 Length=29840 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || | ||| ||||| ||||| || ||||||||||| || |||||||| | Sbjct 4668 CCACCTCTCAATCTCAAAACCAAGTGCAACGTGGACTCTTTTTGGATGTTGTAATCCGCG 4727 Query 33203 AAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | ||||| ||| || ||||| || || ||| || || || |||||||||| Sbjct 4728 A----GAGTTCTCCCGTCTTCTAATTGTTTACCGGCAAAAATCAATCGCTGCTGGTCCGG 4783 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || || ||| | ||| || | | |||||||| | | Sbjct 4784 CGGGATGCCCTCCTTGTCTTGAATTTTCGCTTTCACGTTGTCGATCGTGTCCGAAGACTC 4843 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTT 33354 || || ||||| || ||||| ||||| | |||||| Sbjct 4844 GACTTCGAGAGTGATGGTTTTCCCCGTCAAAGTTTT 4879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318769371353964