Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 176 6e-39 >seq11 Length=57886 Score = 176 bits (194), Expect = 6e-39 Identities = 569/873 (65%), Gaps = 8/873 (1%) Strand=Plus/Plus Query 62970 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63029 ||||| || |||||||||||||| || ||| ||| |||||||||||| | | ||| Sbjct 11763 TTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCACGCATCCTTAAACAACATG 11822 Query 63030 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTT 63088 |||| | |||||||| | || | ||| | ||| || ||| | | || | || || Sbjct 11823 TATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAATAGCAAACCAAAGCTGCTGG-GCATT 11881 Query 63089 TATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 63148 ||| | ||| | ||||||||||||| || |||| |||||| || || Sbjct 11882 AATTGTCTTCTTGCCCTTGTTTTCTCTTTCGTACTTGGTGTACAGAGCTTCGAATTCTTC 11941 Query 63149 TCCCCAAACATT-GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63207 ||||| |||| | ||| || || || || | ||| ||||||| | ||||| |||| Sbjct 11942 ACCCCAG-CATTCGGACAAACCCGGGCACTCGTTCGGGCACATCAGTGTCCACTTGCCGT 12000 Query 63208 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA-TCTCTG 63266 || | |||| |||||| || | ||| |||| | ||| |||| | || | Sbjct 12001 TTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACA-AGCCGTAAAACAAGTCACGA 12059 Query 63267 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63326 | |||| ||| || || || |||||| | | |||||| | | | || || || Sbjct 12060 GCTCTAGCTTCTTCCTTGCCGTGGTTCTTTCTCAAATCGAGCCAGTCGAAGATGTCCGAG 12119 Query 63327 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63386 ||||| ||||| | || ||||| | | | || || || || || || || | Sbjct 12120 TGCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTGCGCTTACCGCCGCCTTGGTCCACA 12179 Query 63387 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63446 || || || |||| || | || | | ||| |||||||||||||| || |||| || Sbjct 12180 TACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGAATAATACCGTTCGAAGTACCGTTT 12239 Query 63447 GTACCGGAGATATAGCTTCCAC-TGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63505 || || |||||| | || ||||||| || | ||| || | ||| || || || Sbjct 12240 GTGCCTCTGATATA-CGAAGACGTGGCACGGATGTCGTGAATGGACAAACCGATACCACC 12298 Query 63506 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATC 63565 || || || || | ||||| || |||||||| |||||||| || ||| || Sbjct 12299 GGCGGACTTGGAAATGCACGCGCACTCCTTCAACGTGTCGTAGATACCTTCAATGGAGTC 12358 Query 63566 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 63625 || ||||| || | ||| || || | || | ||| || || || || || Sbjct 12359 TTCCTTCATGCAAATCAAAAAGCACGAGGAGAGCTGCGGTCGAGGTGTACCAGCGTTGAA 12418 Query 63626 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63685 ||||| || || || ||||| | ||| ||||| | | | ||| || |||||||| Sbjct 12419 CAAGGTTGGCGACGCATGCGTCATCCAACGCTCAGACAACATGTGGTAGGTTTCAATAGC 12478 Query 63686 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63745 || |||||| | || || || | | || | ||| ||||||||||| || | Sbjct 12479 CTTTTCGATATCCTTCTTGTGGATACCGATGGATACTCTCATCAACATGTGCTGTGGACG 12538 Query 63746 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63805 || || | ||| || ||| ||||||||| || |||||||||||| |||||||| Sbjct 12539 CTCGACAACCTTACCGTCTATGCGCAACAAGTATGAGCGTTCCAAAGTTTTGAAACCAAA 12598 Query 63806 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||| || |||||| || ||||| | ||| Sbjct 12599 GTAGTCATAATCAAAGTCACGGTCGTAGACAAT 12631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622930707472880