Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11 187 6e-42 >seq11 Length=57886 Score = 187 bits (206), Expect = 6e-42 Identities = 566/869 (65%), Gaps = 14/869 (2%) Strand=Plus/Minus Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502 |||| || || || ||||| ||||| ||| | || | || |||||||| |||| Sbjct 12546 TTGTCGAGCGTCCACAGCACATGTTGATGAGAGTATCCATCGGTATCCACAAGAAGGATA 12487 Query 363503 TTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGC 363562 | || || |||||||| || | | | || ||| | ||||| || ||| Sbjct 12486 TCGAAAAGGCTATTGAAACCTACCACATGTTGTCTGAGCGTTGGATGACGCATGCGTCGC 12427 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 |||| ||| ||| ||||| || | | || ||| | || || |||||| | | | Sbjct 12426 CAACCTTGTTCAACGCTGGTACACCTCGACCGCAGCTCTCCTCGTGCTTTTTGATTTGCA 12367 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 ||||||| || ||||| || ||||||| ||||| | ||| | || || ||||||| Sbjct 12366 TGAAGGAAGACTCCATTGAAGGTATCTACGACACGTTGAAGGAGTGCGCGTGCATTTCCA 12307 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTC 363742 || || || || || ||| | || || ||| | | ||||| | || || Sbjct 12306 AGTCCGCCGGTGGTATCGGTTTGTCCATTCACGACATCCGTGCCACGTCTTCGTATATCA 12247 Query 363743 GCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 | |||||| || |||| |||| || | |||| |||||||| ||||| || | || Sbjct 12246 GAGGCACAAACGG-TACTTCGAACGGTATTATTCCGATGCTTCGGGTGTTCAACGACACA 12188 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 |||||||| || ||||| || || || |||||||| || || ||||| || |||||||| Sbjct 12187 GCGAGGTATGTGGACCAAGGCGGCGGTAAGCGCAAGGGCGCTTTTGCCATCTATCTCGAA 12128 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 || || | || || || || | || || | | || ||| || || || ||| Sbjct 12127 CCATGGCACTCGGACATCTTCGACTGGCTCGATTTGAGAAAGAACCACGGCAAGGAAGAA 12068 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTT---ATGAAGCGC 363978 | || ||||| |||| || | | ||| | || |||| ||||| | Sbjct 12067 GCTAGAGCTCGTGACTTGTTTTACGGCTTGTGGA---CGAACGATTTGTTCATGAAAAGA 12011 Query 363979 GTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 || || | | || ||| ||| |||| | ||||| |||| || || ||| | ||| Sbjct 12010 GTCGAAGAAAACGGCAAG---TGGACACTGATGTGCCCGAACGAGTGCCCGGGTTTGTCC 11954 Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 || |||||||| || | | ||||| ||| ||||| ||| || |||| Sbjct 11953 GAATGCTGGGGTGAAGAATTCGAAGCTCTGTACACCAAGTACGAAAGAGAAAACAAGGGC 11894 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 ||||||||| || ||| |||| |||||||| || | || |||| | || || Sbjct 11893 AAGAAGACAATTAATGCCCAGCAGCTTTGGTTTGCTATTCTCGAAGCGCAAGTGGAAACT 11834 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || | || || ||||||| || ||| |||||||||||||||| ||||| || | | Sbjct 11833 GGCAACCCATACATGTTGTTTAAGGATGCGTGCAACCGCAAGTCAAACCAACAAAATTTA 11774 Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 || || || | | |||| | ||||| ||||| | |||||||| | || || || Sbjct 11773 GGCACGATCAAATCGTCCAACTTGTGTACAGAGATCGTCGAATACACTTCACCAGAAGAA 11714 Query 364276 ACTGCCGTATGTAACCTTGCGTCGATCGC 364304 || ||||| || ||| | || || ||||| Sbjct 11713 ACCGCCGTTTGCAACTTGGCATCCATCGC 11685 Score = 105 bits (116), Expect = 2e-17 Identities = 287/432 (66%), Gaps = 13/432 (3%) Strand=Plus/Minus Query 364731 TCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790 ||||||||| ||| | || || ||||| || || || || | || || | || || Sbjct 11180 TCGCAACTCTCTCTTAGTTGCACCGATGCCAACCGCGTCAACGTCTCAAATTTTGGGTAA 11121 Query 364791 CAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGA 364850 |||||||||||||||||||| ||| || ||||| | | |||| | || || || Sbjct 11120 CAACGAGTGCTTCGAACCGTATACTTCGAACATTTATGCGAGAAGGGTGTTGTCTGGTGA 11061 Query 364851 ATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA 364910 ||| | || || || | | | | |||| | |||| || |||||| | Sbjct 11060 ATTCACCGTCGTCAACCAACATTTGTTGTCGGATTTGACCGAGTTGGGCTTGTGGGATC- 11002 Query 364911 CAGCA-TGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTC 364969 || | |||||||| || | ||||| | || || ||||| |||||| | | | Sbjct 11001 CATCGCTGAAGAACAATTTGATCGCTGACAACGGCTCTGTTATGAACATC---GACATCC 10945 Query 364970 CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTG 365029 | || || |||| ||||||||||||| || |||||||| | || | | || | | Sbjct 10944 CGGATAATTTGAAAGCTATTTACAAAACTGTTTGGGAAATA---AAGCAACGTGTCTTGG 10888 Query 365030 ---ATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 | ||||| ||||| | || || |||||| ||| ||||| || ||||| || Sbjct 10887 TGGACATGGCTGCCGACAGAGGCGCATTTATCGACCAGTCGCAGTCCTTCAACGTCCACA 10828 Query 365087 TGACTCA-GCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGT 365145 || || | |||||| |||| ||| | || ||| | || ||| ||| |||||||||||| Sbjct 10827 TGTCTGATGCCAAC-TCCGGTAAGTTGACTTCCTTACACTTCCACGCGTGGAAATCCGGA 10769 Query 365146 CTTAAGACAGGT 365157 | ||||| ||| Sbjct 10768 TTGAAGACTGGT 10757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303318231056276