Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq64 136 3e-27 seq277 122 8e-23 seq97 95.1 1e-14 >seq64 Length=29840 Score = 136 bits (150), Expect = 3e-27 Identities = 162/216 (75%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 ||||| |||||||| || ||| ||||||| ||||||| ||||| || ||||| ||||| Sbjct 4881 GTAAA-ACTTTGACGGGGAAAACCATCACTCTCGAAGTCGAGTCTTCGGACACGATCGAC 4823 Query 25071 TCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129 |||| || |||| ||| ||||| || || || || || ||||| ||||| | || Sbjct 4822 AACGTGAAAGCGAAAATTCAA-GACAAGGAGGGCATCCCGCCGGACCAGCAGCGATTGAT 4764 Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189 ||||||||| |||||||||||||| | | ||| | | |||||||| || |||||||| Sbjct 4763 TTTTGCCGGTAAACAATTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGA 4704 Query 25190 ATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| | || || || | || | ||||| || Sbjct 4703 GTCCACGTTGCACTTGGTTTTGAGATTGAGAGGTGG 4668 >seq277 Length=9178 Score = 122 bits (134), Expect = 8e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC-TGAAG 25079 |||| || ||| | || || | || |||||||| || || || ||||| | || | ||| Sbjct 8270 TGACTGGCAAAACGATAACGTTGGAGGTGGAGTCTTCCGATACGATCGA-TAACGTCAAG 8212 Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139 || ||| |||||||||||||| || || |||||||||||| | || || ||||| Sbjct 8211 GCGAAGATCCAAGACAAAGAAGGGATCCCCCCGGACCAACAGCGGTTGATATTCGCCGGG 8152 Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199 || ||||| ||||| | || || ||| |||||||| || ||||| ||||| ||||| Sbjct 8151 AAGCAATTGGAAGACGGGCGAACGTTGGCGGATTACAACATCCAAAAGGAATCGACGCTG 8092 Query 25200 CATTTAGTGCT 25210 || |||||||| Sbjct 8091 CACTTAGTGCT 8081 >seq97 Length=23129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/284 (69%), Gaps = 7/284 (2%) Strand=Plus/Minus Query 51005 CCGC-GTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCTTTGAACGGCCT--GT 51061 |||| ||| |||| |||| ||| | || || | | ||| ||||| || ||| || Sbjct 22352 CCGCTGTATGTCATGTACCGAATTTTTCCGAACACGTCGCGCTCTTTCCAC--CCTTGGT 22295 Query 51062 CGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATCCA 51121 ||||||| ||| || |||||||| || || || ||| | | ||||| | || || | Sbjct 22294 CGTGCACGCCGACGATGGACCACATGCATCCAACGTAACCGCTCGGATCTCTTCCGTCGA 22235 Query 51122 CGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCC 51181 | ||||||| | | ||||| || ||| || | || | | || | || Sbjct 22234 GCGACCAGCGATCGTTCAAAGCGATGGCGTATTTCAAAGCGTTTTCGGGAGTATCGGACC 22175 Query 51182 ATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGCAAC 51241 |||||| |||||||| ||||| |||||||||||| | |||||||| || || || || Sbjct 22174 ATTCCAAGATTTTCTTTGCCCAATACATGCGCATGAATCCGTGCATTTTACCACCGTAAA 22115 Query 51242 GAAGCT-GCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTG 51284 |||| ||| ||| || | |||||| || | |||||| ||||| Sbjct 22114 CGAGCTCGCG-TTGCGCAGCGTTCCATAAATTGTCGTGCGTTTG 22072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433316814450170