Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq330 91.5 2e-13 seq329 91.5 2e-13 seq327 91.5 2e-13 seq114 91.5 2e-13 >seq330 Length=7938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 309/468 (66%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 92794 ACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAA 92853 || ||| | ||||| ||||| || || || |||||||| || ||||| |||| ||| Sbjct 4337 ACGCCAGACTTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAG 4278 Query 92854 GATATCGAATTCA-CTAGTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGATCAAC 92911 || ||| | | || | ||| | || ||| || |||||| | ||| | | | | Sbjct 4277 GAGATCAATTCCATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGC 4218 Query 92912 TCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATT 92971 | | | || ||| || ||| | || ||||| | ||||| || ||||| Sbjct 4217 TGCGAGAGCAAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATA 4158 Query 92972 CCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTC 93030 || | ||| || ||| || | || ||| || || || ||||| || |||| ||||| Sbjct 4157 CCGACAAG-CGCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTC 4099 Query 93031 TTT--CAAGATTTCT--ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACA 93086 | ||| ||||| ||| ||| | | || | || | || ||||| | ||| | Sbjct 4098 GGTAACAATCTTTCTCAATTTTTCTTC-ACCCGGCGTGTTGTTTA--ACATAGT-GTAAA 4043 Query 93087 TTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATG 93146 |||||||| || || | || |||||||| |||| || |||||||||||| ||| | Sbjct 4042 GCAAGCACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGG 3983 Query 93147 TTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaa 93205 | | || || | || |||| ||||||||||| | | || |||| ||| || ||| Sbjct 3982 TAAGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGA-TGGAGCAGAAAGAGCCGGAA 3924 Query 93206 aaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || || || ||||| ||| || || || || | ||||||||| ||| Sbjct 3923 AAGAAGATGCCTTCGACGCAGGCGAACGCGACCAAACGTTCGGCGAAA 3876 >seq329 Length=7938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 309/468 (66%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 92794 ACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAA 92853 || ||| | ||||| ||||| || || || |||||||| || ||||| |||| ||| Sbjct 4337 ACGCCAGACTTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAG 4278 Query 92854 GATATCGAATTCA-CTAGTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGATCAAC 92911 || ||| | | || | ||| | || ||| || |||||| | ||| | | | | Sbjct 4277 GAGATCAATTCCATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGC 4218 Query 92912 TCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATT 92971 | | | || ||| || ||| | || ||||| | ||||| || ||||| Sbjct 4217 TGCGAGAGCAAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATA 4158 Query 92972 CCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTC 93030 || | ||| || ||| || | || ||| || || || ||||| || |||| ||||| Sbjct 4157 CCGACAAG-CGCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTC 4099 Query 93031 TTT--CAAGATTTCT--ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACA 93086 | ||| ||||| ||| ||| | | || | || | || ||||| | ||| | Sbjct 4098 GGTAACAATCTTTCTCAATTTTTCTTC-ACCCGGCGTGTTGTTTA--ACATAGT-GTAAA 4043 Query 93087 TTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATG 93146 |||||||| || || | || |||||||| |||| || |||||||||||| ||| | Sbjct 4042 GCAAGCACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGG 3983 Query 93147 TTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaa 93205 | | || || | || |||| ||||||||||| | | || |||| ||| || ||| Sbjct 3982 TAAGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGA-TGGAGCAGAAAGAGCCGGAA 3924 Query 93206 aaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || || || ||||| ||| || || || || | ||||||||| ||| Sbjct 3923 AAGAAGATGCCTTCGACGCAGGCGAACGCGACCAAACGTTCGGCGAAA 3876 >seq327 Length=7986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 309/468 (66%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 92794 ACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAA 92853 || ||| | ||||| ||||| || || || |||||||| || ||||| |||| ||| Sbjct 3650 ACGCCAGACTTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAG 3709 Query 92854 GATATCGAATTCA-CTAGTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGATCAAC 92911 || ||| | | || | ||| | || ||| || |||||| | ||| | | | | Sbjct 3710 GAGATCAATTCCATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGC 3769 Query 92912 TCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATT 92971 | | | || ||| || ||| | || ||||| | ||||| || ||||| Sbjct 3770 TGCGAGAGCAAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATA 3829 Query 92972 CCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTC 93030 || | ||| || ||| || | || ||| || || || ||||| || |||| ||||| Sbjct 3830 CCGACAAG-CGCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTC 3888 Query 93031 TTT--CAAGATTTCT--ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACA 93086 | ||| ||||| ||| ||| | | || | || | || ||||| | ||| | Sbjct 3889 GGTAACAATCTTTCTCAATTTTTCTTC-ACCCGGCGTGTTGTTTA--ACATAGT-GTAAA 3944 Query 93087 TTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATG 93146 |||||||| || || | || |||||||| |||| || |||||||||||| ||| | Sbjct 3945 GCAAGCACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGG 4004 Query 93147 TTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaa 93205 | | || || | || |||| ||||||||||| | | || |||| ||| || ||| Sbjct 4005 TAAGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGA-TGGAGCAGAAAGAGCCGGAA 4063 Query 93206 aaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || || || ||||| ||| || || || || | ||||||||| ||| Sbjct 4064 AAGAAGATGCCTTCGACGCAGGCGAACGCGACCAAACGTTCGGCGAAA 4111 >seq114 Length=19556 Score = 91.5 bits (100), Expect = 2e-13 Identities = 309/468 (66%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 92794 ACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAA 92853 || ||| | ||||| ||||| || || || |||||||| || ||||| |||| ||| Sbjct 4337 ACGCCAGACTTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAG 4278 Query 92854 GATATCGAATTCA-CTAGTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGATCAAC 92911 || ||| | | || | ||| | || ||| || |||||| | ||| | | | | Sbjct 4277 GAGATCAATTCCATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGC 4218 Query 92912 TCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATT 92971 | | | || ||| || ||| | || ||||| | ||||| || ||||| Sbjct 4217 TGCGAGAGCAAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATA 4158 Query 92972 CCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTC 93030 || | ||| || ||| || | || ||| || || || ||||| || |||| ||||| Sbjct 4157 CCGACAAG-CGCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTC 4099 Query 93031 TTT--CAAGATTTCT--ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACA 93086 | ||| ||||| ||| ||| | | || | || | || ||||| | ||| | Sbjct 4098 GGTAACAATCTTTCTCAATTTTTCTTC-ACCCGGCGTGTTGTTTA--ACATAGT-GTAAA 4043 Query 93087 TTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATG 93146 |||||||| || || | || |||||||| |||| || |||||||||||| ||| | Sbjct 4042 GCAAGCACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGG 3983 Query 93147 TTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaa 93205 | | || || | || |||| ||||||||||| | | || |||| ||| || ||| Sbjct 3982 TAAGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGA-TGGAGCAGAAAGAGCCGGAA 3924 Query 93206 aaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || || || ||||| ||| || || || || | ||||||||| ||| Sbjct 3923 AAGAAGATGCCTTCGACGCAGGCGAACGCGACCAAACGTTCGGCGAAA 3876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556846057110320