Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq64 161 2e-34 seq277 138 2e-27 seq51 95.1 2e-14 >seq64 Length=29840 Score = 161 bits (178), Expect = 2e-34 Identities = 149/189 (79%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| | ||||||||||||||||||||| ||||| | ||| || ||||| || Sbjct 4682 CAAAACCAAGTGCAACGTGGACTCTTTTTGGATGTTGTAATCCGCGAGAGTTCTCCCGTC 4741 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| || || ||||| || || | || || ||||| || || ||||| |||||||| Sbjct 4742 TTCTAATTGTTTACCGGCAAAAATCAATCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 4801 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||| || || || ||| ||||| ||||| | || || ||||| | |||||||| Sbjct 4802 TTGAATTTTCGCTTTCACGTTGTCGATCGTGTCCGAAGACTCGACTTCGAGAGTGATGGT 4861 Query 68429 TTTTCCCGT 68437 ||| ||||| Sbjct 4862 TTTCCCCGT 4870 >seq277 Length=9178 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| || ||||| ||||| || || ||||||||||| ||||| | | || | ||| Sbjct 8078 CGCAGCACTAAGTGCAGCGTCGATTCCTTTTGGATGTTGTAATCCGCCAACGTTCGCCCG 8137 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || ||||||||||||||||| | | |||||||| || || || ||||| ||| Sbjct 8138 TCTTCCAATTGCTTCCCGGCGAATATCAACCGCTGTTGGTCCGGGGGGATCCCTTCTTTG 8197 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| ||||| ||||||||| ||||| || || | || || || ||||| || || Sbjct 8198 TCTTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAAGACTCCACCTCCAACGTTATC 8257 Query 68427 GTTTTTCCCGT 68437 ||||| || || Sbjct 8258 GTTTTGCCAGT 8268 >seq51 Length=33875 Score = 95.1 bits (104), Expect = 2e-14 Identities = 213/320 (67%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 176259 GACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAA 176318 |||||| |||||| || || || | || | ||| ||||| |||| || | | ||| Sbjct 7035 GACGCATGGTCCTTCCCGCCTTGCAAACGCGTACCAAATTGACCGCTCGGGACTAACAAG 6976 Query 176319 TTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGAC 176378 || ||||| |||| || ||| ||||||| || | ||| || | | | ||||||| Sbjct 6975 TTTATGTTGTTCGTCCCAACGAAGTCTTGCGCGAGATTGACAATTGTGGACGCGAGAGAC 6916 Query 176379 GCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTG 176438 || || |||||||||||| | | | || ||| ||| || ||||| |||||| Sbjct 6915 GCTTCACCGTGGTGATAGGCTGAATGTTCCGAGACGTAACCGCTCAATTGCGCAACTTTG 6856 Query 176439 ATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTC 176498 || ||| | || | ||| || ||| |||| || || || ||||| || || Sbjct 6855 ATGTCTGACTTTAACTTTCTCTTGAAGCACGAAAACATAACTTTTCGTTGCGAAGGTTTG 6796 Query 176499 AGACCATCGACGACCGACGGAATGGAACGCTCTACATCGTATCTTGAAAAAAGGATAAGG 176558 | ||||||| | | || ||||| |||||| || ||| || |||||||| | Sbjct 6795 AAGCCATCGATGGCGGATGGAATCGAACGCATTAAATCTGCCAAGGAGAAAAGGATCAAT 6736 Query 176559 TCTTTGTTTATGAAATCCTC 176578 ||||| || ||||| || || Sbjct 6735 TCTTTATTGATGAATTCATC 6716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921598000046960