Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq51 118 2e-21 >seq51 Length=33875 Score = 118 bits (130), Expect = 2e-21 Identities = 308/470 (66%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 297248 TCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCA 297307 ||| | | |||||| | || || ||| ||||| || || ||||| || | || Sbjct 7242 TCTCTCGCATTGTAGTTTGGAATCGAAGTGGACCATCCCGTCCCGATACCTTCGGCGCCG 7183 Query 297308 TTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCA 297367 || | || || | |||||||| |||| |||||| | ||||| ||||| | ||| || Sbjct 7182 TTAATCAAAACAGTTGGAATAACCGGCATGTAATACGCCGGTTCAATCTTCTGACCATCT 7123 Query 297368 TCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGGG 297427 |||| ||||||| | | ||||| || ||| || || ||| | Sbjct 7122 TCATCGTTGTATTTCAACAAAGCGTCGTCGCATTCAGGGAATACAACTCTGGTCAACTGC 7063 Query 297428 TTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAA 297487 || || ||||| || || | ||| || ||||| || || ||||| | || | Sbjct 7062 GCCAAACGCGTAAAAATGTAACGCGGCGACGCATGGTCCTTCCCGCCTTGCAAACGCGTA 7003 Query 297488 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 297547 || || || || ||| | ||| |||| ||||| || | || || | || || || Sbjct 7002 CCAAATTGACCGCTCGGGACTAACAAGTTTATGTTGTTCGTCCCAACGAAGTCTTGCGCG 6943 Query 297548 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 297607 || || || || || ||||| ||||| || ||||||||||| ||| || | Sbjct 6942 AGATTGACAATTGTGGACGCGAGAGACGCTTCACCGTGGTGATAGGCTGAATGTTCCGAG 6883 Query 297608 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAA 297667 ||||||||||| || || ||||| || | ||| | | | || || | |||||| ||| Sbjct 6882 ACGTAACCGCTCAATTGCGCAACTTTGATGTCTGACTTTAACTTTCTCTTGAAGCACGAA 6823 Query 297668 TATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 297717 | || ||||| ||||| ||||||||||| ||||| | | | || ||||| Sbjct 6822 AACATAACTTTTCGTTGCGAAGGTTTGAAGCCATCGATGGCGGATGGAAT 6773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102850071283300