Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq11 158 1e-33 seq51 105 8e-18 seq112 96.9 4e-15 >seq11 Length=57886 Score = 158 bits (174), Expect = 1e-33 Identities = 559/856 (65%), Gaps = 27/856 (3%) Strand=Plus/Plus Query 114470 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 114529 ||||| || |||| || || || | ||| || || |||||| || | || || Sbjct 11685 GCGATGGATGCCAAGTTGCAAACGGCGGTTTCTTCTGGTGAAGTGTATTCGACGATCTCT 11744 Query 114530 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 114589 |||||||| || || || || ||||| || || | ||| |||||||| ||| ||| Sbjct 11745 GTACACAAGTTGGACGATTTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCAC 11804 Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 |||||||| | | ||||||||| | || || ||| ||| | | ||||||||| | Sbjct 11805 GCATCCTTAAACAACATGTATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAATAGCAAAC 11864 Query 114650 CAGACATCGGCGGCTGG-CAC-AGTGGCGTTGGCTCGCCCCTC----CTCCT-CGTACTT 114702 || | || ||||| || | | | || || |||| | ||| | ||||||| Sbjct 11865 CAAA-----GCTGCTGGGCATTAATTGTCTT--CTTGCCCTTGTTTTCTCTTTCGTACTT 11917 Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 114762 ||||| || ||||| || ||||||||| | || || | || || || | || Sbjct 11918 GGTGTACAGAGCTTCGAATTCTTCACCCCAGCATTCGGACAAACCCGGGCACTCGTTCGG 11977 Query 114763 GCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCA 114822 ||| | || | ||| | || || || || | |||||||| | || |||| Sbjct 11978 GCACATCAGTGTCCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCA 12037 Query 114823 GAGAGCTG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 114881 | ||| | | || | || ||| | ||||||||| | || || || | ||| | Sbjct 12038 CA-AGCCGTAAAACAAGTCACGAGCTCTAGCTTCTTCCTTGCCGTGGTTCTTTCTCAAAT 12096 Query 114882 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 114941 | | |||| | ||| |||| |||||| ||||| || || | || | | ||||| | Sbjct 12097 CGAGCCAGTCGAAGATGTCCGAGTGCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTGC 12156 Query 114942 GACGACCA--GCCT-GGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998 | ||| |||| ||| ||||||||||||||| | || || || |||||||| |||| Sbjct 12157 GCTTACCGCCGCCTTGGTCCACATACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGAA 12216 Query 114999 TGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACG-AGACTTATTGGCTCTGACAT 115055 | ||||| | || || ||||| || | || ||||| |||| |||| | || | Sbjct 12217 TAATACCGTTCGAAGTACCGTTTGTGCCTCTGATATACGAAGAC---GTGGCACGGATGT 12273 Query 115056 CATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGAC 115115 | || ||| || ||| ||||| || || |||| || || |||||||||| | | Sbjct 12274 CGTGAATGGACAAACCGATACCACCGGCGGACTTGGAAATGCACGCGCACTCCTTCAACG 12333 Query 115116 TGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTT 115175 || ||||||| || || || ||||| |||| | || | ||||| || | | Sbjct 12334 TGTCGTAGATACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAGCT 12393 Query 115176 GTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGG 115235 | || | ||||||||||||||||| | |||||| | ||| || | | | || | | Sbjct 12394 GCGGTCGAGGTGTACCAGCGTTGAACAAGGTTGGCGACGCATGCGTCATCCAACGCTCAG 12453 Query 115236 ACATCTTATCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 115294 ||| | | | |||||| || | || | | || || | | ||| |||||||| || Sbjct 12454 ACAACATGTGGTAGGTTTCAATAGCCTTTTCG-ATATCCTTCTTGTGGATACCGATGGAT 12512 Query 115295 ACCCGCATAAACATGT 115310 || | ||| ||||||| Sbjct 12513 ACTCTCATCAACATGT 12528 >seq51 Length=33875 Score = 105 bits (116), Expect = 8e-18 Identities = 198/285 (69%), Gaps = 12/285 (4%) Strand=Plus/Minus Query 171925 ACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTC 171984 |||||| ||||||||||| | ||| | | | || || ||||| | || | | |||| Sbjct 7009 ACGCGTACCAAATTGACCGCTCGGGACTAACAAGTTTATGTTGTTCGTCCCAACGAAGTC 6950 Query 171985 ATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTT 172044 | || | |||||||| || |||||| || |||||||||| || ||||| || | Sbjct 6949 TTGCGCGAGATTGACAATTGTGGACGCGAGAGACGCTTCACCGTGGTGATAGGCTGAATG 6890 Query 172045 GTCCGCGACATACGCCGC-CAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGA 172103 |||| ||| || |||| ||| || || || || || || ||| | || | | || Sbjct 6889 TTCCGAGACGTA-ACCGCTCAATTGCGCAACTTTGATGTCTGACTTTAACTTTCTCTTGA 6831 Query 172104 AGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATG- 172162 |||||| | |||| || |||| || ||||| |||| ||| ||| ||| ||| |||| Sbjct 6830 AGCACGAAAACATAACTTTTCGTTGCGAAGGTTTGAAGCCATCG---ATG-GCG-GATGG 6776 Query 172163 ----GAACGCTTCAAGTCTGCCAAGCTGAAATTGACCAAGTCTTT 172203 |||||| | || ||||||||| |||| || ||| ||||| Sbjct 6775 AATCGAACGCATTAAATCTGCCAAGGAGAAAAGGATCAATTCTTT 6731 >seq112 Length=19657 Score = 96.9 bits (106), Expect = 4e-15 Identities = 191/281 (68%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 10237 GACTTGTGCGTAATCCCCCGAGGCACCGGTCGTGATGTATTCCTTTCCATAGATGATCTC 10296 ||||||| | |||| |||||||| || || || | || ||| || |||| | ||| Sbjct 1078 GACTTGTTGGAAATCGCCCGAGGCGCCAGTGGTAACGTCTTCGGCGCCGAAGATCAACTC 1137 Query 10297 TTCCGCCGCGCGACCACCGAGAGCCACGATGATTTGTTGGGTGAGATACTCTTTCGTGTA 10356 ||| || | ||||| || | ||| || ||||| | ||| ||| | | | ||| Sbjct 1138 TTCGGCAACACGACCGCCCATAGCAACCGCCATTTGGTTCTCGAGGTACGATCTGGAGTA 1197 Query 10357 CATAGCGGATTCGG--CGTTATCCTCCGAGGGTTGGAAGAATGTCACACCACCCGCGTCC 10414 || | ||||| || | | | | ||| |||||| |||| ||||||||| | Sbjct 1198 CAATCCTGATTCTAATCGCTCTTCGCTCGGGGC--GAAGAAGGTCAAACCACCCGCAGCG 1255 Query 10415 CCTCGCGGAATGATTGAAACCTTTCGAACTGTGTCGTACCCAGGTAAAGTAGCGCCGACG 10474 |||| |||| ||| || | || ||| | ||||| | || | ||||||||| Sbjct 1256 CCTCTTGGAACGATAGAGATTTTGGCAACCGGATCGTATTCCGGCATCAACGCGCCGACG 1315 Query 10475 ATGGCGTGCCCAGCTTCGTGATACGCCACGAGTTCCTTCTT 10515 |||||||| ||||||||||| ||||| ||||||| |||||| Sbjct 1316 ATGGCGTGGCCAGCTTCGTGGTACGCTACGAGTTTCTTCTT 1356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597337785063440